(6 nodes) Ribosome network (Bradyrhizobium sp.)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplS	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (128 aa)
	rpsP	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family. (110 aa)
	rpmA	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)
	rplQ	LSU ribosomal protein L17p. (138 aa)
	rplM	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (154 aa)
	rpsI	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family. (159 aa)

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplQ	BF49_6600	BF49_6256	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L17p.	0.987
rplM	rplS	BF49_6600	BF49_0371	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.984
rplM	rpmA	BF49_6600	BF49_0438	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplM	rpsI	BF49_6600	BF49_6601	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.	0.998
rplM	rpsP	BF49_6600	BF49_0374	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.982
rplQ	rplM	BF49_6256	BF49_6600	LSU ribosomal protein L17p.	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.987
rplQ	rplS	BF49_6256	BF49_0371	LSU ribosomal protein L17p.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.974
rplQ	rpmA	BF49_6256	BF49_0438	LSU ribosomal protein L17p.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.989
rplQ	rpsI	BF49_6256	BF49_6601	LSU ribosomal protein L17p.	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.	0.981
rplQ	rpsP	BF49_6256	BF49_0374	LSU ribosomal protein L17p.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.974
rplS	rplM	BF49_0371	BF49_6600	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.984
rplS	rplQ	BF49_0371	BF49_6256	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L17p.	0.974
rplS	rpmA	BF49_0371	BF49_0438	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.987
rplS	rpsI	BF49_0371	BF49_6601	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.	0.979
rplS	rpsP	BF49_0371	BF49_0374	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.992
rpmA	rplM	BF49_0438	BF49_6600	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L13p L13Ae; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.991
rpmA	rplQ	BF49_0438	BF49_6256	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L17p.	0.989
rpmA	rplS	BF49_0438	BF49_0371	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.987
rpmA	rpsI	BF49_0438	BF49_6601	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	SSU ribosomal protein S9p S16e; Belongs to the universal ribosomal protein uS9 family.	0.985
rpmA	rpsP	BF49_0438	BF49_0374	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.981