(5 nodes) L28p-like, and Zinc-binding ribosomal protein network (Bradyrhizobium sp.)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpmI	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family. (66 aa)
	rplT	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	rpmB	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family. (103 aa)
	rpmE	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (75 aa)
	rpmG	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family. (55 aa)

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplT	rpmB	BF49_0134	BF49_0617	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.957
rplT	rpmE	BF49_0134	BF49_4283	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.964
rplT	rpmG	BF49_0134	BF49_6460	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	0.963
rplT	rpmI	BF49_0134	BF49_0133	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	0.984
rpmB	rplT	BF49_0617	BF49_0134	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.957
rpmB	rpmE	BF49_0617	BF49_4283	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.964
rpmB	rpmG	BF49_0617	BF49_6460	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	0.981
rpmB	rpmI	BF49_0617	BF49_0133	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	0.969
rpmE	rplT	BF49_4283	BF49_0134	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.964
rpmE	rpmB	BF49_4283	BF49_0617	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.964
rpmE	rpmG	BF49_4283	BF49_6460	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	0.962
rpmE	rpmI	BF49_4283	BF49_0133	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	0.968
rpmG	rplT	BF49_6460	BF49_0134	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.963
rpmG	rpmB	BF49_6460	BF49_0617	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.981
rpmG	rpmE	BF49_6460	BF49_4283	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.962
rpmG	rpmI	BF49_6460	BF49_0133	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	0.966
rpmI	rplT	BF49_0133	BF49_0134	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.984
rpmI	rpmB	BF49_0133	BF49_0617	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.969
rpmI	rpmE	BF49_0133	BF49_4283	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	LSU ribosomal protein L31p LSU ribosomal protein L31p zincindependent; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.968
rpmI	rpmG	BF49_0133	BF49_6460	LSU ribosomal protein L35p; Belongs to the bacterial ribosomal protein bL35 family.	LSU ribosomal protein L33p LSU ribosomal protein L33p zincindependent; Belongs to the bacterial ribosomal protein bL33 family.	0.966