(14 nodes) Mixed, incl. Preribosome, large subunit precursor, and Regulation of epidermis development network (Prunus persica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRUPE_8G015700	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (590 aa)
	PRUPE_8G204300	CP-type G domain-containing protein. (585 aa)
	PRUPE_7G241100	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (328 aa)
	PRUPE_6G014700	Uncharacterized protein. (782 aa)
	PRUPE_4G136600	Uncharacterized protein. (841 aa)
	PRUPE_3G172300	Uncharacterized protein. (478 aa)
	PRUPE_1G069700	Uncharacterized protein. (572 aa)
	PRUPE_1G129500	PUM-HD domain-containing protein. (656 aa)
	PRUPE_1G580700	RRM domain-containing protein. (231 aa)
	PRUPE_7G117100	Brix domain-containing protein. (356 aa)
	PRUPE_7G053600	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (683 aa)
	PRUPE_6G064500	Uncharacterized protein. (90 aa)
	PRUPE_2G203400	Brix domain-containing protein. (348 aa)
	PRUPE_2G282000	Uncharacterized protein. (294 aa)

Your Current Organism:

Prunus persica

NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRUPE_1G069700	PRUPE_1G129500	A0A251QTI0	A0A251QWF6	Uncharacterized protein.	PUM-HD domain-containing protein.	0.830
PRUPE_1G069700	PRUPE_1G580700	A0A251QTI0	A0A251RKQ2	Uncharacterized protein.	RRM domain-containing protein.	0.988
PRUPE_1G069700	PRUPE_2G203400	A0A251QTI0	M5X062	Uncharacterized protein.	Brix domain-containing protein.	0.994
PRUPE_1G069700	PRUPE_2G282000	A0A251QTI0	M5XLM4	Uncharacterized protein.	Uncharacterized protein.	0.983
PRUPE_1G069700	PRUPE_3G172300	A0A251QTI0	A0A251Q1E6	Uncharacterized protein.	Uncharacterized protein.	0.967
PRUPE_1G069700	PRUPE_4G136600	A0A251QTI0	A0A251PNE8	Uncharacterized protein.	Uncharacterized protein.	0.988
PRUPE_1G069700	PRUPE_6G014700	A0A251QTI0	A0A251NIM5	Uncharacterized protein.	Uncharacterized protein.	0.975
PRUPE_1G069700	PRUPE_6G064500	A0A251QTI0	M5WN46	Uncharacterized protein.	Uncharacterized protein.	0.968
PRUPE_1G069700	PRUPE_7G053600	A0A251QTI0	M5W983	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.986
PRUPE_1G069700	PRUPE_7G117100	A0A251QTI0	M5VQ98	Uncharacterized protein.	Brix domain-containing protein.	0.994
PRUPE_1G069700	PRUPE_7G241100	A0A251QTI0	A0A251NG46	Uncharacterized protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.993
PRUPE_1G069700	PRUPE_8G015700	A0A251QTI0	A0A251MUQ3	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.941
PRUPE_1G069700	PRUPE_8G204300	A0A251QTI0	A0A251N0U1	Uncharacterized protein.	CP-type G domain-containing protein.	0.536
PRUPE_1G129500	PRUPE_1G069700	A0A251QWF6	A0A251QTI0	PUM-HD domain-containing protein.	Uncharacterized protein.	0.830
PRUPE_1G129500	PRUPE_1G580700	A0A251QWF6	A0A251RKQ2	PUM-HD domain-containing protein.	RRM domain-containing protein.	0.999
PRUPE_1G129500	PRUPE_2G203400	A0A251QWF6	M5X062	PUM-HD domain-containing protein.	Brix domain-containing protein.	0.933
PRUPE_1G129500	PRUPE_2G282000	A0A251QWF6	M5XLM4	PUM-HD domain-containing protein.	Uncharacterized protein.	0.915
PRUPE_1G129500	PRUPE_3G172300	A0A251QWF6	A0A251Q1E6	PUM-HD domain-containing protein.	Uncharacterized protein.	0.868
PRUPE_1G129500	PRUPE_4G136600	A0A251QWF6	A0A251PNE8	PUM-HD domain-containing protein.	Uncharacterized protein.	0.933
PRUPE_1G129500	PRUPE_6G014700	A0A251QWF6	A0A251NIM5	PUM-HD domain-containing protein.	Uncharacterized protein.	0.911

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