11 items (Prunus persica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRUPE_8G182600	Uncharacterized protein. (919 aa)
	PRUPE_7G187900	Uncharacterized protein. (572 aa)
	PRUPE_5G103500	ARID domain-containing protein. (610 aa)
	PRUPE_6G035300	Uncharacterized protein. (330 aa)
	PRUPE_5G004500	Uncharacterized protein. (399 aa)
	PRUPE_6G312100	Uncharacterized protein. (375 aa)
	PRUPE_5G099000	Uncharacterized protein. (1851 aa)
	PRUPE_2G173100	ARID domain-containing protein. (811 aa)
	PRUPE_3G031800	ARID domain-containing protein. (783 aa)
	PRUPE_1G008100	Uncharacterized protein. (395 aa)
	PRUPE_1G358300	Uncharacterized protein. (332 aa)

Your Current Organism:

Prunus persica

NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRUPE_1G008100	PRUPE_1G358300	A0A251QQZ1	A0A251R8B8	Uncharacterized protein.	Uncharacterized protein.	0.723
PRUPE_1G008100	PRUPE_6G035300	A0A251QQZ1	M5WIU1	Uncharacterized protein.	Uncharacterized protein.	0.725
PRUPE_1G008100	PRUPE_6G312100	A0A251QQZ1	A0A251NY86	Uncharacterized protein.	Uncharacterized protein.	0.669
PRUPE_1G358300	PRUPE_1G008100	A0A251R8B8	A0A251QQZ1	Uncharacterized protein.	Uncharacterized protein.	0.723
PRUPE_1G358300	PRUPE_6G035300	A0A251R8B8	M5WIU1	Uncharacterized protein.	Uncharacterized protein.	0.801
PRUPE_1G358300	PRUPE_6G312100	A0A251R8B8	A0A251NY86	Uncharacterized protein.	Uncharacterized protein.	0.715
PRUPE_6G035300	PRUPE_1G008100	M5WIU1	A0A251QQZ1	Uncharacterized protein.	Uncharacterized protein.	0.725
PRUPE_6G035300	PRUPE_1G358300	M5WIU1	A0A251R8B8	Uncharacterized protein.	Uncharacterized protein.	0.801
PRUPE_6G035300	PRUPE_6G312100	M5WIU1	A0A251NY86	Uncharacterized protein.	Uncharacterized protein.	0.715
PRUPE_6G035300	PRUPE_7G187900	M5WIU1	M5VTY4	Uncharacterized protein.	Uncharacterized protein.	0.429
PRUPE_6G312100	PRUPE_1G008100	A0A251NY86	A0A251QQZ1	Uncharacterized protein.	Uncharacterized protein.	0.669
PRUPE_6G312100	PRUPE_1G358300	A0A251NY86	A0A251R8B8	Uncharacterized protein.	Uncharacterized protein.	0.715
PRUPE_6G312100	PRUPE_6G035300	A0A251NY86	M5WIU1	Uncharacterized protein.	Uncharacterized protein.	0.715
PRUPE_7G187900	PRUPE_6G035300	M5VTY4	M5WIU1	Uncharacterized protein.	Uncharacterized protein.	0.429

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