(23 nodes) Six-hairpin glycosidase-like superfamily network (Flavobacterium johnsoniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fjoh_1401	Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein. (767 aa)
	Fjoh_2406	Candidate d-4,5 unsaturated beta-glycuronidase; PFAM: glycosyl hydrolase, family 88. (392 aa)
	Fjoh_2641	Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic. (395 aa)
	Fjoh_2716	PFAM: uncharacterised conserved protein UCP028846. (487 aa)
	Fjoh_3112	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95. (822 aa)
	Fjoh_3868	Candidate xylanase; PFAM: glycoside hydrolase, family 8. (430 aa)
	Fjoh_4080	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases. (916 aa)
	Fjoh_4082	Predicted lipoprotein. (522 aa)
	Fjoh_4083	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95. (816 aa)
	Fjoh_4085	alpha-L-rhamnosidase-like proteins; Related to alpha-L-rhamnosidases. (926 aa)
	Fjoh_4105	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases. (728 aa)
	Fjoh_4196	Candidate d-4,5 unsaturated beta-glycuronidase; Predicted lipoprotein. (396 aa)
	Fjoh_4223	Hypothetical protein. (708 aa)
	Fjoh_4224	Hypothetical protein. (1136 aa)
	Fjoh_4250	Candidate d-4,5-unsaturated beta-glycuronidase; Predicted lipoprotein. (397 aa)
	Fjoh_4236	D-4,5-unsaturated beta-glycuronidase-like protein; Related to d-4,5-unsaturated beta-glycuronidases. (374 aa)
	Fjoh_4251	Candidate d-4,5-unsaturated beta-glycuronidase; PFAM: glycosyl hydrolase, family 88. (401 aa)
	Fjoh_4252	Candidate d-4,5-unsaturated beta-glycuronidase; PFAM: glycosyl hydrolase, family 88. (399 aa)
	Fjoh_4428	Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein. (668 aa)
	Fjoh_4956	N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man). (396 aa)
	Fjoh_0772	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95. (802 aa)
	Fjoh_1022	Candidate beta-glycosidase; Related to endoglucanases; Glycoside hydrolase family 8; D5 module. (465 aa)
	Fjoh_1262	Candidate alpha,alpha-trehalase; PFAM: glycoside hydrolase, family 37. (621 aa)

Your Current Organism:

Flavobacterium johnsoniae

NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Fjoh_0772	Fjoh_3112	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.905
Fjoh_0772	Fjoh_4083	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.909
Fjoh_1262	Fjoh_1401	Candidate alpha,alpha-trehalase; PFAM: glycoside hydrolase, family 37.	Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.	0.922
Fjoh_1401	Fjoh_1262	Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.	Candidate alpha,alpha-trehalase; PFAM: glycoside hydrolase, family 37.	0.922
Fjoh_1401	Fjoh_2641	Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.	Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic.	0.456
Fjoh_1401	Fjoh_4428	Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.	Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.	0.476
Fjoh_2641	Fjoh_1401	Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic.	Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.	0.456
Fjoh_3112	Fjoh_0772	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.905
Fjoh_3112	Fjoh_4083	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.910
Fjoh_3112	Fjoh_4085	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	alpha-L-rhamnosidase-like proteins; Related to alpha-L-rhamnosidases.	0.422
Fjoh_4080	Fjoh_4082	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases.	Predicted lipoprotein.	0.675
Fjoh_4080	Fjoh_4083	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.480
Fjoh_4082	Fjoh_4080	Predicted lipoprotein.	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases.	0.675
Fjoh_4082	Fjoh_4083	Predicted lipoprotein.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.468
Fjoh_4082	Fjoh_4085	Predicted lipoprotein.	alpha-L-rhamnosidase-like proteins; Related to alpha-L-rhamnosidases.	0.521
Fjoh_4082	Fjoh_4105	Predicted lipoprotein.	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases.	0.761
Fjoh_4083	Fjoh_0772	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.909
Fjoh_4083	Fjoh_3112	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	0.910
Fjoh_4083	Fjoh_4080	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	alpha-L-rhamnosidase-like protein; Related to alpha-L-rhamnosidases.	0.480
Fjoh_4083	Fjoh_4082	Candidate alpha-L-fucosidase; Glycoside hydrolase family 95.	Predicted lipoprotein.	0.468

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