STRINGSTRING
Fjoh_0606 Fjoh_0606 Fjoh_0460 Fjoh_0460 Fjoh_0493 Fjoh_0493 Fjoh_0708 Fjoh_0708 sprB sprB Fjoh_1152 Fjoh_1152 folE folE Fjoh_2667 Fjoh_2667 Fjoh_3730 Fjoh_3730 Fjoh_4334 Fjoh_4334
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Fjoh_0606TIGRFAM: YD repeat protein; PFAM: Thrombospondin type 3 repeat; YD repeat-containing protein. (3662 aa)
Fjoh_0460PFAM: MotA/TolQ/ExbB proton channel. (230 aa)
Fjoh_0493PFAM: MotA/TolQ/ExbB proton channel. (274 aa)
Fjoh_0708Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
sprBSprB; Cell-surface protein involved in gliding motility; PMID 18281397. (6497 aa)
Fjoh_1152Peptidase family C1A; Predicted lipoprotein; Belongs to the peptidase C1 family. (398 aa)
folEPFAM: GTP cyclohydrolase I. (223 aa)
Fjoh_2667TIGRFAM: YD repeat protein. (1152 aa)
Fjoh_3730TIGRFAM: YD repeat protein. (1152 aa)
Fjoh_4334PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (415 aa)
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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