STRINGSTRING
Fjoh_0022 Fjoh_0022 carB carB carA carA Fjoh_0664 Fjoh_0664 Fjoh_0708 Fjoh_0708 purA purA glmS glmS Fjoh_1130 Fjoh_1130 Fjoh_1280 Fjoh_1280 Fjoh_1747 Fjoh_1747 Fjoh_1753 Fjoh_1753 Fjoh_2160 Fjoh_2160 Fjoh_2161 Fjoh_2161 purA-2 purA-2 Fjoh_2251 Fjoh_2251 Fjoh_2252 Fjoh_2252 Fjoh_2271 Fjoh_2271 Fjoh_2344 Fjoh_2344 Fjoh_2345 Fjoh_2345 Fjoh_2497 Fjoh_2497 Fjoh_2909 Fjoh_2909 Fjoh_3403 Fjoh_3403 argH argH Fjoh_3435 Fjoh_3435 Fjoh_4056 Fjoh_4056 Fjoh_4244 Fjoh_4244 Fjoh_4334 Fjoh_4334 pyrB pyrB Fjoh_5015 Fjoh_5015
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Fjoh_0022TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family. (372 aa)
carBTIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein. (951 aa)
carATIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; Belongs to the CarA family. (372 aa)
Fjoh_0664PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (255 aa)
Fjoh_0708Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
purAAdenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (360 aa)
glmSGlutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (616 aa)
Fjoh_1130Amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II. (632 aa)
Fjoh_1280TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase. (342 aa)
Fjoh_1747PFAM: aminotransferase, class I and II. (396 aa)
Fjoh_1753TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase. (541 aa)
Fjoh_2160TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (484 aa)
Fjoh_2161PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase. (1519 aa)
purA-2Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (423 aa)
Fjoh_2251TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase. (558 aa)
Fjoh_2252TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase. (537 aa)
Fjoh_2271PFAM: aminotransferase, class V; aminotransferase, class I and II. (398 aa)
Fjoh_2344Glutamate--ammonia ligase; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp. (338 aa)
Fjoh_2345PFAM: glutamine synthetase, catalytic region. (729 aa)
Fjoh_2497TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; Belongs to the aspartate/glutamate racemases family. (230 aa)
Fjoh_2909PFAM: alanine dehydrogenase/PNT domain protein. (399 aa)
Fjoh_3403TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase. (469 aa)
argHTIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase. (426 aa)
Fjoh_3435PFAM: argininosuccinate synthase; ExsB family protein. (397 aa)
Fjoh_4056L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (507 aa)
Fjoh_4244PFAM: aldehyde dehydrogenase. (452 aa)
Fjoh_4334PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (415 aa)
pyrBTIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (308 aa)
Fjoh_5015TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase C-terminal domain protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (448 aa)
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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