STRINGSTRING
Fjoh_0708 Fjoh_0708 Fjoh_2160 Fjoh_2160 Fjoh_2161 Fjoh_2161 Fjoh_2344 Fjoh_2344 Fjoh_2345 Fjoh_2345 Fjoh_2413 Fjoh_2413 Fjoh_2418 Fjoh_2418 Fjoh_3992 Fjoh_3992 Fjoh_4334 Fjoh_4334 Fjoh_4624 Fjoh_4624 Fjoh_4625 Fjoh_4625 Fjoh_4629 Fjoh_4629 Fjoh_4633 Fjoh_4633 Fjoh_4763 Fjoh_4763
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Fjoh_0708Glutamate dehydrogenase (NADP(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
Fjoh_2160TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (484 aa)
Fjoh_2161PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase. (1519 aa)
Fjoh_2344Glutamate--ammonia ligase; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp. (338 aa)
Fjoh_2345PFAM: glutamine synthetase, catalytic region. (729 aa)
Fjoh_2413Nitric oxide reductase large subunit-like protein. (744 aa)
Fjoh_2418Nitrite reductase, copper-containing; Predicted lipoprotein. (479 aa)
Fjoh_3992PFAM: 2-nitropropane dioxygenase, NPD. (361 aa)
Fjoh_4334PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (415 aa)
Fjoh_4624TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein. (837 aa)
Fjoh_4625TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein. (125 aa)
Fjoh_4629PFAM: major facilitator superfamily MFS_1. (494 aa)
Fjoh_4633Ferredoxin-nitrate reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (1171 aa)
Fjoh_4763Carbonate dehydratase; PFAM: carbonic anhydrase. (211 aa)
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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