Your Input: | |
| | aceE | Pyruvate dehydrogenase (acetyl-transferring), homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (884 aa) |
| | ACR14207.1 | Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family. (91 aa) |
| | moaD | Molybdopterin converting factor, subunit 1; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682. (88 aa) |
| | moaE | Molybdopterin converting factor, subunit 2; Identified by match to protein family HMM PF02391. (147 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (942 aa) |
| | glgC | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (421 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1407 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1360 aa) |
| | ACR13125.1 | Regulatory protein, FmdB family; Identified by match to protein family HMM PF09723; match to protein family HMM TIGR02605. (96 aa) |
| | uvrD_1 | UvrD/REP DNA helicase II; Identified by similarity to SP:P03018; match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily. (1138 aa) |
| | ahpF | Alkyl hydroperoxide reductase, F subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140. (528 aa) |
| | ACR13581.1 | Glutamate synthase [NADH/NADPH] small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317. (490 aa) |
| | ACR13382.1 | Glutamate synthase [NADH/NADPH] large chain; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. (1535 aa) |
| | ACR12296.1 | Conserved hypothetical protein; Identified by match to protein family HMM TIGR03546. (167 aa) |
| | argF | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. (304 aa) |
| | ACR13350.1 | Ribonucleoside-diphosphate reductase alpha subunit, class I; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (961 aa) |
| | ACR14800.1 | Ribonucleoside-diphosphate reductase; Identified by match to protein family HMM PF00268. (453 aa) |
| | gcvP | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (961 aa) |
| | dinB | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (360 aa) |
| | ACR13580.1 | Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. (916 aa) |
| | ACR13303.1 | HTH domain protein; Identified by match to protein family HMM PF08220; match to protein family HMM PF08279. (245 aa) |
| | ACR13677.1 | Carbohydrate binding module family 48 domain protein. (101 aa) |
| | pfkA | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (320 aa) |
| | ACR13742.1 | Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549. (218 aa) |
| | folK_1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498. (160 aa) |
| | ACR11062.1 | Identified by match to protein family HMM PF01712. (228 aa) |
| | ACR13338.1 | Gluconolaconase domain protein; Identified by match to protein family HMM PF08450. (298 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (640 aa) |
| | rpoD | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (619 aa) |
| | ACR14784.1 | Putative methyltransferase; Probable secreted protein, N-terminal signal sequence. (257 aa) |
| | hisH_1 | Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (225 aa) |
| | gcvH | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (130 aa) |
| | gcvT | Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. (363 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (229 aa) |
| | ppk | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (711 aa) |
| | ACR13399.1 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa) |
| | coaBC | Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (409 aa) |
| | radC | DNA repair protein RadC; Identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. (224 aa) |
| | rph | tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (239 aa) |
| | rpoZ | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (93 aa) |
| | ACR12427.1 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00196. (372 aa) |
| | fliA | RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (235 aa) |
| | cysD_1 | Sulfate adenylyltransferase, small subunit; Identified by match to protein family HMM PF01507; match to protein family HMM TIGR02039. (308 aa) |
| | cysN_1 | Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (468 aa) |
| | ACR11120.1 | Hypothetical protein; Identified by glimmer; putative. (273 aa) |
| | pheS | phenylalanyl-tRNA synthetase, alpha subunit; Identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (329 aa) |
| | pheT | phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (794 aa) |
| | ACR13032.1 | Ring hydroxylating dioxygenase, alpha subunit; Identified by match to protein family HMM PF00355; match to protein family HMM PF00848. (402 aa) |
| | ACR13522.1 | Ring hydroxylating dioxygenase, beta subunit; Identified by match to protein family HMM PF00866. (163 aa) |
| | ACR10922.1 | Glycoside hydrolase family 105 domain protein; Identified by match to protein family HMM PF07470. (832 aa) |
| | ACR13028.1 | Glycoside hydrolase family 35 domain protein; Identified by match to protein family HMM PF02449. (557 aa) |
| | nifQ | Nitrogen fixation protein, NifQ; Identified by match to protein family HMM PF04891. (196 aa) |
| | ACR11244.1 | Dinitrogenase iron-molybdenum cofactor; Identified by match to protein family HMM PF02579. (241 aa) |
| | nifD | Nitrogenase molybdenum-iron protein alpha chain; Identified by match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862. (493 aa) |
| | ACR12678.1 | Putative ferredoxin subunit; Identified by match to protein family HMM PF00355. (117 aa) |
| | nifK | Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (523 aa) |
| | ACR12819.1 | Trypsin; Identified by match to protein family HMM PF00089. (427 aa) |
| | ACR10979.1 | Taurine dioxygenase; Identified by match to protein family HMM PF02668. (266 aa) |
| | cysM | Cysteine synthase B; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01138; Belongs to the cysteine synthase/cystathionine beta- synthase family. (296 aa) |
| | ACR11320.1 | Putative transcriptional regulator; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family. (215 aa) |
| | ACR11749.1 | Integron integrase; Identified by match to protein family HMM PF00589; match to protein family HMM TIGR02249; Belongs to the 'phage' integrase family. (322 aa) |
| | hisH_2 | Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (206 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (136 aa) |
| | ACR13018.1 | Putative lipoprotein. (569 aa) |
| | ACR14561.1 | Identified by match to protein family HMM PF00296. (322 aa) |
| | ACR13022.1 | Conserved hypothetical protein. (148 aa) |
| | recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (677 aa) |
| | ACR13506.1 | Transposase, OrfA. (85 aa) |
| | ACR12279.1 | Conserved hypothetical protein. (192 aa) |
| | ACR10859.1 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa) |
| | ACR11879.1 | AAA ATPase, central region; Identified by match to protein family HMM PF00004. (323 aa) |
| | ACR13819.1 | Sulfide-quinone reductase; Identified by match to protein family HMM PF07992. (423 aa) |
| | cysD_2 | Sulfate adenylyltransferase, small subunit; Identified by match to protein family HMM PF01507; match to protein family HMM TIGR02039. (304 aa) |
| | cysN_2 | Sulfate adenylyltransferase, large subunit; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (632 aa) |
| | ACR13080.1 | Putative membrane protein. (537 aa) |
| | ACR11156.1 | Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01565. (439 aa) |
| | ACR11008.1 | Putative formamidase regulatory protein FmdB; Identified by match to protein family HMM PF09723. (117 aa) |
| | ACR11641.1 | Putative Mg chelatase; Identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368. (512 aa) |
| | ureB | Urease, beta subunit; Identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family. (107 aa) |
| | ureC | Urease, alpha subunit; Identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (567 aa) |
| | ureG | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. (204 aa) |
| | ACR11223.1 | Hypothetical protein; Identified by glimmer; putative. (270 aa) |
| | ACR12510.1 | Conserved hypothetical protein; Identified by match to protein family HMM PF08874. (342 aa) |
| | ACR12108.1 | Conserved hypothetical protein; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family. (392 aa) |
| | ACR13477.1 | 4-carboxymuconolactone decarboxylase family protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (116 aa) |
| | cysK | Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139. (348 aa) |
| | ACR11185.1 | Putative TypeI restriction-modification system, methylase subunit; Identified by match to protein family HMM PF02384. (716 aa) |
| | ACR11943.1 | Putative type I restriction-modification system specificity subunit; Identified by match to protein family HMM PF01420. (401 aa) |
| | ACR13547.1 | Cysteine synthase; Identified by match to protein family HMM PF00291. (306 aa) |
| | ACR14438.1 | Conserved hypothetical protein. (152 aa) |
| | holA | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. (349 aa) |
| | prs | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (315 aa) |
| | rpoN | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (511 aa) |
| | ACR13481.1 | Conserved hypothetical protein. (154 aa) |
| | ribH | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. (155 aa) |
| | ACR11129.1 | Fumarate reductase respiratory complex, transmembrane subunit; Identified by match to protein family HMM PF02967. (251 aa) |
| | sspB | Stringent starvation protein B, hypothetical; Identified by match to protein family HMM PF04386. (131 aa) |
| | cobQ | Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (486 aa) |
| | hslU | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (438 aa) |
| | hslV | ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (179 aa) |
| | ACR14230.1 | Glutamate synthase [NADPH], large subunit; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898. (1481 aa) |
| | ACR11212.1 | Glutamate synthase small chain; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318. (472 aa) |
| | uca | Urea carboxylase; Identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00724; match to protein family HMM TIGR02712. (1201 aa) |
| | ACR13278.1 | Carbohydrate binding module family 4 domain protein; Identified by match to protein family HMM PF02018. (894 aa) |
| | ACR12314.1 | Anti-sigm factor, ChrR; Identified by match to protein family HMM PF07883; match to protein family HMM TIGR02451. (228 aa) |
| | ACR11761.1 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (177 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (206 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (347 aa) |
| | rimI | Ribosomal-protein-alanine acetyltransferase; Identified by similarity to SP:P0A944; match to protein family HMM PF00583; match to protein family HMM TIGR01575. (167 aa) |
| | ACR13179.1 | TM2 domain containing protein+B7201; Identified by match to protein family HMM PF05154. (135 aa) |
| | ACR14060.1 | Acetolactate synthase large subunit; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family. (610 aa) |
| | ACR12881.1 | Conserved hypothetical protein; Identified by match to protein family HMM PF01936. (258 aa) |
| | ACR14396.1 | Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. (317 aa) |
| | cobN | CobN/magnesium chelatase; Identified by match to protein family HMM PF02514. (1483 aa) |
| | carA | Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; Belongs to the CarA family. (386 aa) |
| | carB | Carbamoyl-phosphate synthase, large subunit; Identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; Belongs to the CarB family. (1073 aa) |
| | xseB | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa) |
| | ACR11049.1 | Putative D-lactate dehydrogenase; Identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (331 aa) |
| | folK_2 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498. (162 aa) |
| | ACR12163.1 | ATPase of the AAA+ class; Identified by match to protein family HMM PF00004. (493 aa) |
| | ACR11202.1 | Conserved hypothetical protein. (317 aa) |
| | accC | acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (446 aa) |
| | accB | acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (154 aa) |
| | ACR11037.1 | RNA polymerase sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (163 aa) |
| | ACR11157.1 | Conserved hypothetical protein; Identified by match to protein family HMM PF01906; Belongs to the UPF0145 family. (113 aa) |
| | pyrB | Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (341 aa) |
| | dnaE2 | Putative DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1033 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. (439 aa) |
| | rpoS | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (337 aa) |
| | ACR12317.1 | Ferredoxin-1; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa) |
| | mutS | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (864 aa) |
| | ACR14653.1 | Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196. (373 aa) |
| | ACR12607.1 | Conserved hypothetical protein. (1208 aa) |
| | oadA | Oxaloacetate decarboxylase alpha subunit; Identified by match to protein family HMM PF00364; match to protein family HMM PF00682; match to protein family HMM PF02436; match to protein family HMM TIGR01108. (595 aa) |
| | pyk | Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family. (482 aa) |
| | ACR13423.1 | Conserved hypothetical protein. (281 aa) |
| | dnaX | DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (672 aa) |
| | holC | DNA polymerase III subunit chi; Identified by match to protein family HMM PF04364. (140 aa) |
| | iscS | Cysteine desulfurase; Identified by similarity to SP:P0A6B7; match to protein family HMM PF00266; match to protein family HMM PF01212. (391 aa) |
| | ACR10927.1 | Iron-sulfur cluster assembly accessory family protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family. (116 aa) |
| | thiG | Thiamine biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (268 aa) |
| | thiS | Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683. (71 aa) |
| | xseA | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (453 aa) |
| | sdhC | Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970. (124 aa) |
| | sucA | Oxoglutarate dehydrogenase (succinyl-transferring), E1 component; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239. (945 aa) |
| | sucB | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoyllysine-residue succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (412 aa) |
| | sucC | Putative succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (389 aa) |
| | sucD | succinyl-CoA ligase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (290 aa) |
| | gpsA | Putative glycerol-3-phosphate dehydrogenase; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF02737; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (340 aa) |
| | leuC | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (474 aa) |
| | leuD | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (215 aa) |
| | accD | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (289 aa) |
| | ACR14690.1 | Conserved Hypothetical protein. (177 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (671 aa) |
| | uvrC | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (619 aa) |
| | hsdS | Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420. (424 aa) |
| | hsdM | Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497. (535 aa) |
| | ACR12761.1 | 2-oxo acid dehydrogenases acyltransferase; Identified by match to protein family HMM PF00198. (252 aa) |
| | ACR10876.1 | Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. (333 aa) |
| | ACR13768.1 | 4-cresol dehydrogenase; Identified by match to protein family HMM PF01565. (540 aa) |
| | ACR14188.1 | AAA ATPase, central domain protein; Identified by match to protein family HMM PF00004. (475 aa) |
| | ACR10952.1 | Conserved hypothetical protein; Identified by match to protein family HMM PF09540; match to protein family HMM TIGR02241. (151 aa) |
| | ACR11041.1 | Conserved hypothetical phage tail protein; Identified by match to protein family HMM PF09540; match to protein family HMM TIGR02241. (152 aa) |
| | ACR11438.1 | Luciferase-like monooxygenase; Identified by match to protein family HMM PF00296. (377 aa) |
| | ACR11781.1 | Transposase, OrfA; Identified by match to protein family HMM PF01527. (111 aa) |
| | dnaQ | DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (239 aa) |
| | ACR13084.1 | Oligopeptide transport system permease protein OppC; Identified by similarity to SP:P24139; match to protein family HMM PF00528. (298 aa) |
| | ACR14574.1 | Methyltransferase, FkbM family; Identified by match to protein family HMM TIGR01444. (309 aa) |
| | ACR14334.1 | Conserved hypothetical protein. (253 aa) |
| | ACR10950.1 | Site specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589. (414 aa) |
| | ACR12642.1 | Pyruvate kinase; Identified by match to protein family HMM PF00224; Belongs to the pyruvate kinase family. (503 aa) |
| | ACS93552.1 | Putative transposase; Identified by match to protein family HMM PF01527. (111 aa) |
| | ACR14415.1 | Transposase OrfB; Identified by similarity to OMNI:SO_A0065; match to protein family HMM PF00665. (268 aa) |
| | ACR12382.1 | Transposase, OrfA; Identified by match to protein family HMM PF01527. (111 aa) |
| | ACS93549.1 | Transposase, orfB; Identified by match to protein family HMM PF00665. (268 aa) |
| | ACS93548.1 | Transposase, OrfA; Identified by match to protein family HMM PF01527. (111 aa) |
| | ACR13564.1 | Integron integrase; Identified by match to protein family HMM PF00589; match to protein family HMM TIGR02249; Belongs to the 'phage' integrase family. (355 aa) |
| | holB | DNA polymerase III subunit delta prime; Identified by match to protein family HMM TIGR00678. (339 aa) |
| | ACR14583.1 | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266. (507 aa) |
| | ACR11605.1 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (719 aa) |
| | ACR14032.1 | Ribonucleotide reductase, alpha subunit. (230 aa) |
| | clpX_2 | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (429 aa) |
| | clpX_1 | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (431 aa) |
| | nifS | Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (402 aa) |
| | nifU | Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (317 aa) |
| | nifN | Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; Identified by match to protein family HMM PF00148; match to protein family HMM TIGR01285; Belongs to the NifD/NifK/NifE/NifN family. (461 aa) |
| | nifE | Nitrogenase MoFe cofactor biosynthesis protein NifE; Identified by match to protein family HMM PF00148; match to protein family HMM TIGR01283; Belongs to the NifD/NifK/NifE/NifN family. (471 aa) |
| | ACR14399.1 | ATPase, AAA family; Identified by match to protein family HMM PF00004. (568 aa) |
| | ACR10862.1 | Nitrogenase iron-molybdenum cofactor; Identified by match to protein family HMM PF02579. (234 aa) |
| | ACR11219.1 | Putative exonuclease; Identified by match to protein family HMM PF00929. (235 aa) |
| | glyQ | glycyl-tRNA synthetase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388. (316 aa) |
| | glyS | glycyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211. (686 aa) |
| | dnaN | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (367 aa) |
| | ACR12218.1 | Identified by match to protein family HMM PF01206. (80 aa) |
| | ACR14767.1 | Esterase/lipase/thioesterase family catalytic domain protein. (221 aa) |
| | ACR11562.1 | Histidine kinase. (466 aa) |
| | accA | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (318 aa) |
| | dnaE | DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. (1171 aa) |
| | ilvN | Acetolactate synthase, small subunit; Identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119. (163 aa) |
| | ilvB | Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118. (578 aa) |
| | nadE | Glutamine-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (542 aa) |
| | aceF | Dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (649 aa) |
