(42 nodes) Carboxylic acid catabolic process network (Kocuria rhizophila)

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	ald	Alanine dehydrogenase; Belongs to the AlaDH/PNT family. (362 aa)
	hutH	Histidine ammonia-lyase; Protein synonym:histidase. (509 aa)
	hutI	Imidazolonepropionase; Protein synonym:imidazolone-5-propionate hydrolase. (391 aa)
	hutU	Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (572 aa)
	hutG	Formiminoglutamate hydrolase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. (386 aa)
	KRH_22400	Putative hydrolase. (553 aa)
	KRH_22360	Tyramine oxidase. (443 aa)
	hpaI	Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family. (256 aa)
	soxG	Sarcosine oxidase gamma subunit. (229 aa)
	soxA	Sarcosine oxidase alpha subunit. (970 aa)
	fadB	Fatty oxidation complex alpha subunit; Multifunctional protein. (699 aa)
	gdh	NAD-dependent glutamate dehydrogenase. (1694 aa)
	KRH_19460	Putative hydrolase. (542 aa)
	KRH_19440	Putative hydrolase. (558 aa)
	KRH_17730	Putative threonine dehydratase. (415 aa)
	KRH_17330	Flavin-containing amine oxidase. (470 aa)
	fadA	Putative acetyl-CoA acyltransferase; Protein synonym:3-ketoacyl-CoA thiolase; protein synonym:fatty oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family. (458 aa)
	KRH_16380	Putative amidohydrolase; Belongs to the peptidase M20A family. (425 aa)
	dapA	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (311 aa)
	prpB	2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. (303 aa)
	gcvH	Glycine cleavage system H-protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (128 aa)
	KRH_14520	Putative glutathione-dependent formaldehyde dehydrogenase; Protein synonym:S-(hydroxymethyl)glutathione dehydrogenase. (394 aa)
	KRH_13770	Hypothetical protein. (391 aa)
	dtd	D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (150 aa)
	coaBC	Putative phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase; Bifunctional protein; protein synonym:DNA/pantothenate metabolism flavoprotein Dfp; protein synonym:coenzyme A biosynthesis bifunctional protein CoaBC. (472 aa)
	KRH_12210	Putative dihydrodipicolinate synthase; Belongs to the DapA family. (305 aa)
	KRH_10270	Fumarylacetoacetate hydrolase family protein. (259 aa)
	KRH_09530	Hypothetical protein. (220 aa)
	KRH_07580	Putative hydrolase. (260 aa)
	pcaB	3-carboxy-cis,cis-muconate cycloisomerase; Protein synonym:3-carboxymuconate lactonizing enzyme. (490 aa)
	pcaH	Protocatechuate 3,4-dioxygenase beta subunit. (251 aa)
	gcvT	Aminomethyltransferase; Protein synonym:glycine cleavage system T-protein. (381 aa)
	gcvP	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (964 aa)
	KRH_02360	Protein synonym:acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
	paaJ	Putative beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (407 aa)
	paaA	Putative phenylacetate-CoA oxygenase subunit PaaA; Protein synonym:phenylacetic acid degradation protein. (355 aa)
	paaB	Putative phenylacetate-CoA oxygenase subunit PaaB; Protein synonym:phenylacetic acid degradation protein. (98 aa)
	paaC	Putative phenylacetate-CoA oxygenase subunit PaaC; Protein synonym:phenylacetic acid degradation protein. (278 aa)
	KRH_01950	Putative amidohydrolase. (464 aa)
	putA	Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Bifunctional protein; Belongs to the aldehyde dehydrogenase family. (1202 aa)
	pdx2	Pyridoxal phosphate synthase component Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (228 aa)
	puo	Putrescine oxidase. (485 aa)

Your Current Organism:

Kocuria rhizophila

NCBI taxonomy Id: 378753
Other names: K. rhizophila DC2201, Kocuria rhizophila ATCC 9341, Kocuria rhizophila DC2201, Kocuria rhizophila DSM 348, Kocuria rhizophila NBRC 103217, Kocuria rhizophila str. DC2201, Kocuria rhizophila strain DC2201, Micrococcus luteus ATCC 9341

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRH_02360	fadA	KRH_02360	KRH_16760	Protein synonym:acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative acetyl-CoA acyltransferase; Protein synonym:3-ketoacyl-CoA thiolase; protein synonym:fatty oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.	0.920
KRH_02360	fadB	KRH_02360	KRH_20960	Protein synonym:acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex alpha subunit; Multifunctional protein.	0.996
KRH_02360	prpB	KRH_02360	KRH_15310	Protein synonym:acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.	0.841
KRH_10270	putA	KRH_10270	KRH_01330	Fumarylacetoacetate hydrolase family protein.	Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Bifunctional protein; Belongs to the aldehyde dehydrogenase family.	0.435
KRH_12210	dapA	KRH_12210	KRH_15910	Putative dihydrodipicolinate synthase; Belongs to the DapA family.	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.928
KRH_12210	gcvP	KRH_12210	KRH_05980	Putative dihydrodipicolinate synthase; Belongs to the DapA family.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.402
KRH_17730	gcvP	KRH_17730	KRH_05980	Putative threonine dehydratase.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.530
KRH_19440	KRH_19460	KRH_19440	KRH_19460	Putative hydrolase.	Putative hydrolase.	0.560
KRH_19460	KRH_19440	KRH_19460	KRH_19440	Putative hydrolase.	Putative hydrolase.	0.560
ald	gcvP	KRH_01980	KRH_05980	Alanine dehydrogenase; Belongs to the AlaDH/PNT family.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.458
dapA	KRH_12210	KRH_15910	KRH_12210	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Putative dihydrodipicolinate synthase; Belongs to the DapA family.	0.928
dapA	gcvP	KRH_15910	KRH_05980	Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.402
fadA	KRH_02360	KRH_16760	KRH_02360	Putative acetyl-CoA acyltransferase; Protein synonym:3-ketoacyl-CoA thiolase; protein synonym:fatty oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.	Protein synonym:acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.920
fadA	fadB	KRH_16760	KRH_20960	Putative acetyl-CoA acyltransferase; Protein synonym:3-ketoacyl-CoA thiolase; protein synonym:fatty oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty oxidation complex alpha subunit; Multifunctional protein.	0.996
fadA	prpB	KRH_16760	KRH_15310	Putative acetyl-CoA acyltransferase; Protein synonym:3-ketoacyl-CoA thiolase; protein synonym:fatty oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.	2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.	0.841
fadB	KRH_02360	KRH_20960	KRH_02360	Fatty oxidation complex alpha subunit; Multifunctional protein.	Protein synonym:acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.996
fadB	fadA	KRH_20960	KRH_16760	Fatty oxidation complex alpha subunit; Multifunctional protein.	Putative acetyl-CoA acyltransferase; Protein synonym:3-ketoacyl-CoA thiolase; protein synonym:fatty oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.	0.996
fadB	gcvP	KRH_20960	KRH_05980	Fatty oxidation complex alpha subunit; Multifunctional protein.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.469
fadB	paaJ	KRH_20960	KRH_02300	Fatty oxidation complex alpha subunit; Multifunctional protein.	Putative beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.996
fadB	putA	KRH_20960	KRH_01330	Fatty oxidation complex alpha subunit; Multifunctional protein.	Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Bifunctional protein; Belongs to the aldehyde dehydrogenase family.	0.421

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