(6 nodes) Mixed, incl. Pentapeptide repeat, and SEC-C motif network (Stigmatella aurantiaca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADO68572.1	SEC-C motif domain protein. (426 aa)
	ADO70124.1	LysM domain protein, Peptidoglycan-binding protein. (240 aa)
	ADO73463.1	Conserved uncharacterized protein. (621 aa)
	ADO74335.1	Conserved uncharacterized protein. (486 aa)
	ADO74908.1	Tetratricopeptide repeat protein. (3177 aa)
	ADO75282.1	Conserved uncharacterized protein. (258 aa)

Your Current Organism:

Stigmatella aurantiaca

NCBI taxonomy Id: 378806
Other names: S. aurantiaca DW4/3-1, Stigmatella aurantiaca DW4/3-1, Stigmatella aurantiaca str. DW4/3-1, Stigmatella aurantiaca strain DW4/3-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADO68572.1	ADO70124.1	STAUR_0768	STAUR_2320	SEC-C motif domain protein.	LysM domain protein, Peptidoglycan-binding protein.	0.761
ADO68572.1	ADO73463.1	STAUR_0768	STAUR_5700	SEC-C motif domain protein.	Conserved uncharacterized protein.	0.773
ADO68572.1	ADO74335.1	STAUR_0768	STAUR_6578	SEC-C motif domain protein.	Conserved uncharacterized protein.	0.769
ADO68572.1	ADO74908.1	STAUR_0768	STAUR_7152	SEC-C motif domain protein.	Tetratricopeptide repeat protein.	0.777
ADO68572.1	ADO75282.1	STAUR_0768	STAUR_7527	SEC-C motif domain protein.	Conserved uncharacterized protein.	0.805
ADO70124.1	ADO68572.1	STAUR_2320	STAUR_0768	LysM domain protein, Peptidoglycan-binding protein.	SEC-C motif domain protein.	0.761
ADO70124.1	ADO73463.1	STAUR_2320	STAUR_5700	LysM domain protein, Peptidoglycan-binding protein.	Conserved uncharacterized protein.	0.772
ADO70124.1	ADO74335.1	STAUR_2320	STAUR_6578	LysM domain protein, Peptidoglycan-binding protein.	Conserved uncharacterized protein.	0.816
ADO70124.1	ADO74908.1	STAUR_2320	STAUR_7152	LysM domain protein, Peptidoglycan-binding protein.	Tetratricopeptide repeat protein.	0.772
ADO70124.1	ADO75282.1	STAUR_2320	STAUR_7527	LysM domain protein, Peptidoglycan-binding protein.	Conserved uncharacterized protein.	0.781
ADO73463.1	ADO68572.1	STAUR_5700	STAUR_0768	Conserved uncharacterized protein.	SEC-C motif domain protein.	0.773
ADO73463.1	ADO70124.1	STAUR_5700	STAUR_2320	Conserved uncharacterized protein.	LysM domain protein, Peptidoglycan-binding protein.	0.772
ADO73463.1	ADO74335.1	STAUR_5700	STAUR_6578	Conserved uncharacterized protein.	Conserved uncharacterized protein.	0.773
ADO73463.1	ADO74908.1	STAUR_5700	STAUR_7152	Conserved uncharacterized protein.	Tetratricopeptide repeat protein.	0.783
ADO73463.1	ADO75282.1	STAUR_5700	STAUR_7527	Conserved uncharacterized protein.	Conserved uncharacterized protein.	0.774
ADO74335.1	ADO68572.1	STAUR_6578	STAUR_0768	Conserved uncharacterized protein.	SEC-C motif domain protein.	0.769
ADO74335.1	ADO70124.1	STAUR_6578	STAUR_2320	Conserved uncharacterized protein.	LysM domain protein, Peptidoglycan-binding protein.	0.816
ADO74335.1	ADO73463.1	STAUR_6578	STAUR_5700	Conserved uncharacterized protein.	Conserved uncharacterized protein.	0.773
ADO74335.1	ADO74908.1	STAUR_6578	STAUR_7152	Conserved uncharacterized protein.	Tetratricopeptide repeat protein.	0.774
ADO74335.1	ADO75282.1	STAUR_6578	STAUR_7527	Conserved uncharacterized protein.	Conserved uncharacterized protein.	0.775

page 1 of 2

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About