STRINGSTRING
rocF rocF GAU_3909 GAU_3909 mug mug GAU_3922 GAU_3922 GAU_0976 GAU_0976 GAU_1016 GAU_1016 GAU_1068 GAU_1068 GAU_1080 GAU_1080 GAU_1088 GAU_1088 GAU_1105 GAU_1105 GAU_1116 GAU_1116 GAU_1131 GAU_1131 GAU_1155 GAU_1155 hyuA hyuA hyuB hyuB GAU_1182 GAU_1182 GAU_1192 GAU_1192 ychF ychF GAU_1209 GAU_1209 GAU_1211 GAU_1211 GAU_1227 GAU_1227 GAU_1233 GAU_1233 ispE ispE dinG dinG GAU_1257 GAU_1257 GAU_1262 GAU_1262 GAU_1292 GAU_1292 GAU_1372 GAU_1372 GAU_1410 GAU_1410 GAU_1457 GAU_1457 tadA tadA GAU_1499 GAU_1499 GAU_1510 GAU_1510 GAU_1524 GAU_1524 GAU_1537 GAU_1537 ribF ribF GAU_1583 GAU_1583 GAU_1701 GAU_1701 ybeY ybeY truA truA purF purF GAU_1746 GAU_1746 GAU_1862 GAU_1862 GAU_1883 GAU_1883 nadD nadD GAU_2023 GAU_2023 GAU_2046 GAU_2046 speA speA GAU_2065 GAU_2065 GAU_2094 GAU_2094 acsA acsA nfo nfo GAU_2167 GAU_2167 GAU_2170 GAU_2170 cysD cysD GAU_2301 GAU_2301 GAU_2303 GAU_2303 GAU_2415 GAU_2415 GAU_2418 GAU_2418 GAU_2429 GAU_2429 purD purD ubiX ubiX GAU_2460 GAU_2460 GAU_2463 GAU_2463 etfA etfA gcdH gcdH GAU_2494 GAU_2494 GAU_2545 GAU_2545 GAU_2580 GAU_2580 GAU_2587 GAU_2587 acs acs GAU_2619 GAU_2619 rnz rnz GAU_2699 GAU_2699 mgtE mgtE GAU_2709 GAU_2709 GAU_2736 GAU_2736 hemA hemA hemH hemH bioB bioB GAU_2895 GAU_2895 GAU_2970 GAU_2970 GAU_3021 GAU_3021 sufB sufB sufD sufD GAU_3038 GAU_3038 GAU_3071 GAU_3071 GAU_3084 GAU_3084 GAU_3085 GAU_3085 GAU_3101 GAU_3101 GAU_3113 GAU_3113 GAU_3127 GAU_3127 GAU_3136 GAU_3136 GAU_0091 GAU_0091 GAU_0097 GAU_0097 GAU_0123 GAU_0123 argC argC argB argB GAU_0163 GAU_0163 GAU_0166 GAU_0166 GAU_0189 GAU_0189 GAU_0192 GAU_0192 amaA amaA GAU_0248 GAU_0248 GAU_0369 GAU_0369 GAU_0438 GAU_0438 GAU_0440 GAU_0440 GAU_0473 GAU_0473 GAU_0512 GAU_0512 nth nth GAU_0555 GAU_0555 chlI chlI GAU_0666 GAU_0666 pdhB pdhB pdhA pdhA GAU_0774 GAU_0774 GAU_0777 GAU_0777 GAU_0779 GAU_0779 GAU_0783 GAU_0783 GAU_0784 GAU_0784 GAU_0797 GAU_0797 adk adk GAU_0915 GAU_0915 ccdA ccdA GAU_3153 GAU_3153 prpE prpE GAU_3222 GAU_3222 GAU_3261 GAU_3261 GAU_3271 GAU_3271 GAU_3272 GAU_3272 GAU_3301 GAU_3301 GAU_3308 GAU_3308 GAU_3317 GAU_3317 GAU_3381 GAU_3381 GAU_3384 GAU_3384 GAU_3394 GAU_3394 lig lig GAU_3404 GAU_3404 GAU_3455 GAU_3455 GAU_3572 GAU_3572 GAU_3608 GAU_3608 GAU_3640 GAU_3640 GAU_3736 GAU_3736 GAU_3740 GAU_3740 fhs fhs GAU_3773 GAU_3773 cpsA1 cpsA1 sgaA sgaA GAU_3810 GAU_3810 selO selO pheA pheA GAU_3847 GAU_3847 GAU_3882 GAU_3882 GAU_0037 GAU_0037
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rocFArginase; Belongs to the arginase family. (309 aa)
GAU_3909Putative glutamine cyclotransferase. (283 aa)
mugProtein synonym: mismatch-specific uracil DNA-glycosylase. (187 aa)
GAU_3922Hypothetical protein. (465 aa)
GAU_0976Hypothetical protein. (371 aa)
GAU_1016Hypothetical protein. (328 aa)
GAU_1068Peptidase M28A family protein. (605 aa)
GAU_1080Hypothetical protein. (316 aa)
GAU_1088Hypothetical protein. (724 aa)
GAU_1105Hypothetical protein. (267 aa)
GAU_1116Gliding motility protein. (225 aa)
GAU_1131Aminotransferase. (396 aa)
GAU_1155Hypothetical membrane protein. (147 aa)
hyuAHydantoin utilization protein A. (643 aa)
hyuBHydantoin utilization protein B. (528 aa)
GAU_1182Hypothetical protein. (296 aa)
GAU_1192Hypothetical protein. (252 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa)
GAU_1209Hypothetical protein. (575 aa)
GAU_1211Peptidase M28D family protein. (559 aa)
GAU_1227Hypothetical protein. (182 aa)
GAU_1233Hypothetical protein. (204 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (295 aa)
dinGPutative ATP-dependent DNA helicase. (713 aa)
GAU_1257Fumarylacetoacetate hydrolase family protein. (204 aa)
GAU_1262Peptidase M28A family protein. (578 aa)
GAU_1292acyl-CoA dehydrogenase. (394 aa)
GAU_1372Peptidase M28A family protein. (343 aa)
GAU_1410Gliding motility protein. (229 aa)
GAU_1457Putative isobutyryl-CoA mutase large subunit. (531 aa)
tadAPutative deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (144 aa)
GAU_1499Putative transposase orfA for insertion sequence element. (98 aa)
GAU_1510Peptidase M28A family protein. (512 aa)
GAU_1524Hypothetical protein. (347 aa)
GAU_1537Hypothetical protein. (280 aa)
ribFRiboflavin kinase/FMN adenylyltransferase; Bifunctional protein; protein synonym: FAD pyrophosphorylase; protein synonym: FAD synthetase; protein synonym: flavokinase; protein synonym: riboflavin biosynthesis protein RibF; Belongs to the ribF family. (326 aa)
GAU_1583Hypothetical protein. (366 aa)
GAU_1701acyl-CoA dehydrogenase. (405 aa)
ybeYHypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (167 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (259 aa)
purFAmidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (460 aa)
GAU_1746Hypothetical protein; Belongs to the pirin family. (311 aa)
GAU_1862Hypothetical protein. (597 aa)
GAU_1883Putative phosphatase. (567 aa)
nadDPutative nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (211 aa)
GAU_2023Peptidase M20D family protein. (399 aa)
GAU_2046Hypothetical protein. (950 aa)
speABiosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (652 aa)
GAU_2065Hypothetical protein. (459 aa)
GAU_2094Putative cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (324 aa)
acsAPutative acetoacetyl-CoA synthetase. (672 aa)
nfoEndonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (293 aa)
GAU_2167Putative phosphatase. (362 aa)
GAU_2170Hypothetical protein. (421 aa)
cysDProtein synonym: O-acetylhomoserine sulfhydrylase; protein synonym: OAH sulfhydrylase; protein synonym: homocysteine synthase. (459 aa)
GAU_2301Hypothetical protein. (157 aa)
GAU_2303Hypothetical protein. (417 aa)
GAU_2415Hypothetical protein. (167 aa)
GAU_2418Hypothetical protein. (261 aa)
GAU_2429Hypothetical protein. (254 aa)
purDPhosphoribosylamine--glycine ligase; Protein synonym: GARS; protein synonym: glycinamide ribonucleotide synthetase; protein synonym: phosphoribosylglycinamide synthetase; Belongs to the GARS family. (426 aa)
ubiXAromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (212 aa)
GAU_24606-pyruvoyl tetrahydropterin synthase family protein. (151 aa)
GAU_2463Hypothetical protein. (248 aa)
etfAProtein synonym: electron transfer flavoprotein large subunit. (329 aa)
gcdHglutaryl-CoA dehydrogenase. (402 aa)
GAU_2494Hypothetical protein. (328 aa)
GAU_2545Putative acyl-CoA dehydrogenase. (596 aa)
GAU_2580Cytochrome oxidase assembly family protein. (326 aa)
GAU_2587Putative oxidoreductase. (436 aa)
acsAcetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (654 aa)
GAU_2619Hypothetical protein. (379 aa)
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (314 aa)
GAU_2699Hypothetical protein. (171 aa)
mgtEMagnesium transporter; Acts as a magnesium transporter. (470 aa)
GAU_2709Hypothetical membrane protein. (241 aa)
GAU_2736Hypothetical protein. (341 aa)
hemAglutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (395 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (396 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (355 aa)
GAU_2895Hypothetical membrane protein. (259 aa)
GAU_2970DNA-3-methyladenine glycosylase. (219 aa)
GAU_3021Hypothetical membrane protein. (205 aa)
sufBPutative iron-sulfur cluster assembly protein SufB. (477 aa)
sufDPutative iron-sulfur cluster assembly protein SufD. (438 aa)
GAU_3038Hypothetical protein. (749 aa)
GAU_3071Putative endonuclease IV; Protein synonym: endodeoxyribonuclease IV. (299 aa)
GAU_3084Hypothetical protein. (586 aa)
GAU_3085Peptidase M20D family protein. (446 aa)
GAU_3101Hypothetical protein. (350 aa)
GAU_3113Peptidase M20D family protein. (431 aa)
GAU_3127Hypothetical membrane protein. (267 aa)
GAU_3136Hypothetical protein. (637 aa)
GAU_0091Putative amidase. (316 aa)
GAU_0097Hypothetical protein. (724 aa)
GAU_0123Hypothetical protein. (377 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (339 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (260 aa)
GAU_0163Glutamate carboxypeptidase II. (723 aa)
GAU_0166Putative fatty acid desaturase. (281 aa)
GAU_0189Putative hydrolase. (359 aa)
GAU_0192Transaminase. (367 aa)
amaAN-acyl-L-amino acid amidohydrolase; Protein synonym: L-aminoacylase. (380 aa)
GAU_0248Glycolate oxidase. (358 aa)
GAU_0369DNA-3-methyladenine glycosylase. (243 aa)
GAU_0438Fumarylacetoacetase; Protein synonym: fumarylacetoacetate hydrolase. (433 aa)
GAU_0440acyl-CoA dehydrogenase. (620 aa)
GAU_0473Hypothetical protein; Belongs to the CoA-transferase III family. (377 aa)
GAU_0512Hypothetical membrane protein. (401 aa)
nthPutative DNA glycosylase/AP lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (246 aa)
GAU_0555acyl-CoA dehydrogenase. (385 aa)
chlIProtein synonym: protoporphyrin IX magnesium-chelatase. (497 aa)
GAU_0666Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (168 aa)
pdhBPyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (326 aa)
pdhAPyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (347 aa)
GAU_0774Exonuclease. (397 aa)
GAU_0777Hypothetical protein. (326 aa)
GAU_07796-pyruvoyl tetrahydropterin synthase family protein. (137 aa)
GAU_0783Long-chain fatty-acid-CoA ligase; Fragment. (231 aa)
GAU_0784Long-chain fatty-acid-CoA ligase; Fragment. (379 aa)
GAU_0797Fatty acid-CoA racemase; Belongs to the CoA-transferase III family. (284 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (214 aa)
GAU_0915Hypothetical protein. (337 aa)
ccdACytochrome c-type biogenesis protein CcdA; Protein synonym: thiol-disulfide oxidoreductase. (241 aa)
GAU_3153Hypothetical protein; Belongs to the glutamate synthase family. (524 aa)
prpEpropionyl-CoA synthetase. (641 aa)
GAU_3222Protein synonym: isochorismate mutase. (411 aa)
GAU_3261Hypothetical protein. (372 aa)
GAU_3271Putative 2-aminobenzoate-CoA ligase. (541 aa)
GAU_3272acyl-CoA dehydrogenase. (392 aa)
GAU_3301Putative acetyltransferase. (160 aa)
GAU_3308Peptidase M28D family protein. (457 aa)
GAU_3317Hypothetical protein. (262 aa)
GAU_3381Hypothetical protein. (326 aa)
GAU_3384AraC family transcriptional regulator. (298 aa)
GAU_3394Hypothetical protein. (190 aa)
ligATP-dependent DNA ligase. (529 aa)
GAU_3404Hypothetical protein. (358 aa)
GAU_3455Peptidase M28D family protein. (553 aa)
GAU_3572Hypothetical protein. (2009 aa)
GAU_3608Hypothetical protein; Belongs to the pirin family. (300 aa)
GAU_3640Putative acetyltransferase. (146 aa)
GAU_3736Hypothetical protein. (405 aa)
GAU_3740Hypothetical protein. (127 aa)
fhsFormate--tetrahydrofolate ligase; Protein synonym: FHS; protein synonym: FTHFS; protein synonym: formyltetrahydrofolate synthetase; Belongs to the formate--tetrahydrofolate ligase family. (561 aa)
GAU_3773Putative acetyltransferase. (160 aa)
cpsA1Carboxypeptidase Ss1. (449 aa)
sgaASerine--glyoxylate aminotransferase; Protein synonym: SGAT. (390 aa)
GAU_3810Ornithine cyclodeaminase/mu-crystallin family protein. (336 aa)
selOHypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). (522 aa)
pheAPrephenate dehydratase; Protein synonym: PDT. (197 aa)
GAU_3847Hypothetical protein. (536 aa)
GAU_38826-pyruvoyl tetrahydropterin synthase family protein. (127 aa)
GAU_0037Hypothetical protein. (135 aa)
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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