STRINGSTRING
GAU_0235 GAU_0235 lpd lpd sucB sucB GAU_0745 GAU_0745 GAU_1039 GAU_1039 kynB kynB GAU_1289 GAU_1289 GAU_1957 GAU_1957 GAU_1993 GAU_1993 GAU_2061 GAU_2061 GAU_2302 GAU_2302 gcdH gcdH GAU_2554 GAU_2554 fadJ fadJ GAU_3087 GAU_3087 GAU_3244 GAU_3244 kynU kynU indO indO katG katG GAU_3382 GAU_3382
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GAU_0235Putative amidase. (483 aa)
lpdProtein synonym: dihydrolipoyl dehydrogenase. (470 aa)
sucBDihydrolipoamide acyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (409 aa)
GAU_0745Protein synonym: dihydrolipoyl dehydrogenase. (466 aa)
GAU_1039Putative amidase; Belongs to the amidase family. (404 aa)
kynBHypothetical protein; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. (212 aa)
GAU_1289Protein synonym: acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
GAU_1957Decarboxylase. (501 aa)
GAU_1993Dihydrolipoamide acyltransferase. (440 aa)
GAU_2061Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (809 aa)
GAU_2302Hydrolase; Belongs to the amidase family. (502 aa)
gcdHglutaryl-CoA dehydrogenase. (402 aa)
GAU_2554Putative amidase. (524 aa)
fadJenoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; Bifunctional protein. (737 aa)
GAU_3087Aromatic amino acid decarboxylase. (494 aa)
GAU_3244acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (456 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (413 aa)
indOProtein synonym: IDO; protein synonym: indoleamine-pyrrole 2,3-dioxygenase. (370 aa)
katGCatalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (736 aa)
GAU_3382Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (510 aa)
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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