(10 nodes) HPT domain superfamily network (Vibrio sinaloensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KIE21405.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (957 aa)
	KIE18725.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (742 aa)
	KIE19038.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	KIE19003.1	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	KIE19964.1	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (1317 aa)
	KIE20363.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	KIE20313.1	Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
	KIE20645.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (774 aa)
	KIE22009.1	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa)
	KIE21650.1	Two-component hybrid sensor and regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1594 aa)

Your Current Organism:

Vibrio sinaloensis

NCBI taxonomy Id: 379097
Other names: CAIM 797, CECT 7298, V. sinaloensis, Vibrio sinaloensis Gomez-Gil et al. 2008, Vibrio sp. CAIM 695, Vibrio sp. CAIM 797

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIE18725.1	KIE19964.1	SE23_20920	SE23_13550	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KIE18725.1	KIE20313.1	SE23_20920	SE23_11120	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
KIE18725.1	KIE20363.1	SE23_20920	SE23_11390	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KIE18725.1	KIE20645.1	SE23_20920	SE23_10610	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
KIE18725.1	KIE21405.1	SE23_20920	SE23_04025	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
KIE18725.1	KIE21650.1	SE23_20920	SE23_05385	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component hybrid sensor and regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KIE18725.1	KIE22009.1	SE23_20920	SE23_07330	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
KIE19003.1	KIE19964.1	SE23_18530	SE23_13550	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
KIE19003.1	KIE20313.1	SE23_18530	SE23_11120	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KIE19003.1	KIE20363.1	SE23_18530	SE23_11390	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KIE19003.1	KIE20645.1	SE23_18530	SE23_10610	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
KIE19003.1	KIE21405.1	SE23_18530	SE23_04025	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KIE19003.1	KIE21650.1	SE23_18530	SE23_05385	Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component hybrid sensor and regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KIE19038.1	KIE19964.1	SE23_18725	SE23_13550	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
KIE19038.1	KIE20313.1	SE23_18725	SE23_11120	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KIE19038.1	KIE20363.1	SE23_18725	SE23_11390	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KIE19038.1	KIE20645.1	SE23_18725	SE23_10610	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
KIE19038.1	KIE21405.1	SE23_18725	SE23_04025	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KIE19038.1	KIE21650.1	SE23_18725	SE23_05385	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component hybrid sensor and regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KIE19964.1	KIE18725.1	SE23_13550	SE23_20920	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921