Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KIE18678.1 | KIE19128.1 | SE23_21150 | SE23_19215 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PTS glucose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.658 |
| KIE18678.1 | KIE20535.1 | SE23_21150 | SE23_12330 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PTS system glucose-specific transporter subunit IIA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.997 |
| KIE18678.1 | cyaA | SE23_21150 | SE23_19550 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Adenylate cyclase; Catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.802 |
| KIE18797.1 | KIE19002.1 | SE23_20440 | SE23_18525 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.843 |
| KIE18797.1 | KIE20313.1 | SE23_20440 | SE23_11120 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.459 |
| KIE18797.1 | KIE20646.1 | SE23_20440 | SE23_10615 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.844 |
| KIE18797.1 | KIE20999.1 | SE23_20440 | SE23_08045 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.830 |
| KIE18797.1 | KIE21651.1 | SE23_20440 | SE23_05390 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.556 |
| KIE18797.1 | KIE22419.1 | SE23_20440 | SE23_02690 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.854 |
| KIE18797.1 | KIE22420.1 | SE23_20440 | SE23_02695 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.775 |
| KIE18797.1 | KIE22421.1 | SE23_20440 | SE23_02700 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.826 |
| KIE18797.1 | hfq | SE23_20440 | SE23_19995 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.607 |
| KIE18797.1 | rpoS | SE23_20440 | SE23_08470 | RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.808 |
| KIE18918.1 | KIE19003.1 | SE23_19590 | SE23_18530 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphorelay protein LuxU; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.574 |
| KIE18918.1 | KIE19091.1 | SE23_19590 | SE23_19020 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.820 |
| KIE18918.1 | KIE19157.1 | SE23_19590 | SE23_19360 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.707 |
| KIE18918.1 | KIE19169.1 | SE23_19590 | SE23_19430 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.853 |
| KIE18918.1 | KIE19729.1 | SE23_19590 | SE23_15790 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.878 |
| KIE18918.1 | KIE19739.1 | SE23_19590 | SE23_15845 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.748 |
| KIE18918.1 | KIE20313.1 | SE23_19590 | SE23_11120 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.967 |
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