STRINGSTRING
KZO58411.1 KZO58411.1 mutM mutM smc smc xerC-2 xerC-2 KZO59817.1 KZO59817.1 A2U19_04915 A2U19_04915 KZO59919.1 KZO59919.1 KZO59907.1 KZO59907.1 KZO59898.1 KZO59898.1 KZO59888.1 KZO59888.1 KZO59875.1 KZO59875.1 KZO59868.1 KZO59868.1 KZO59852.1 KZO59852.1 KZO59821.1 KZO59821.1 A2U19_04410 A2U19_04410 polA polA uvrB uvrB uvrA uvrA KZO59995.1 KZO59995.1 KZO60072.1 KZO60072.1 KZO60026.1 KZO60026.1 KZO60100.1 KZO60100.1 KZO60099.1 KZO60099.1 KZO60102.1 KZO60102.1 KZO60178.1 KZO60178.1 KZO60175.1 KZO60175.1 xerC xerC KZO60132.1 KZO60132.1 KZO60261.1 KZO60261.1 KZO60245.1 KZO60245.1 KZO60235.1 KZO60235.1 KZO60259.1 KZO60259.1 KZO60223.1 KZO60223.1 KZO60222.1 KZO60222.1 KZO60221.1 KZO60221.1 KZO60203.1 KZO60203.1 KZO60332.1 KZO60332.1 uvrC uvrC priA priA KZO60336.1 KZO60336.1 ruvB ruvB ruvA ruvA ruvC ruvC KZO60372.1 KZO60372.1 KZO60376.1 KZO60376.1 A2U19_02010 A2U19_02010 recA recA lexA lexA KZO60431.1 KZO60431.1 KZO60499.1 KZO60499.1 KZO60497.1 KZO60497.1 KZO60496.1 KZO60496.1 KZO60502.1 KZO60502.1 KZO60457.1 KZO60457.1 KZO60454.1 KZO60454.1 KZO60451.1 KZO60451.1 mfd mfd KZO60577.1 KZO60577.1 KZO60556.1 KZO60556.1 nrdF nrdF KZO60619.1 KZO60619.1 KZO57614.1 KZO57614.1 KZO57613.1 KZO57613.1 KZO57611.1 KZO57611.1 KZO57588.1 KZO57588.1 A2U19_00235 A2U19_00235 A2U19_00225 A2U19_00225 KZO57633.1 KZO57633.1 KZO57637.1 KZO57637.1 KZO57646.1 KZO57646.1 KZO57644.1 KZO57644.1 KZO57638.1 KZO57638.1 KZO58387.1 KZO58387.1 A2U19_00060 A2U19_00060 KZO59618.1 KZO59618.1 ung ung KZO59627.1 KZO59627.1 ligA ligA KZO59579.1 KZO59579.1 dnaJ dnaJ KZO59533.1 KZO59533.1 KZO59539.1 KZO59539.1 KZO59360.1 KZO59360.1 KZO59378.1 KZO59378.1 xseA xseA xseB xseB KZO59460.1 KZO59460.1 KZO59417.1 KZO59417.1 KZO59203.1 KZO59203.1 A2U19_07815 A2U19_07815 KZO59314.1 KZO59314.1 KZO59318.1 KZO59318.1 KZO59077.1 KZO59077.1 KZO59098.1 KZO59098.1 KZO59101.1 KZO59101.1 KZO59165.1 KZO59165.1 A2U19_08805 A2U19_08805 A2U19_08810 A2U19_08810 KZO58902.1 KZO58902.1 topA topA KZO58910.1 KZO58910.1 nth nth A2U19_09535 A2U19_09535 recR recR KZO59001.1 KZO59001.1 KZO59044.1 KZO59044.1 KZO59025.1 KZO59025.1 KZO58886.1 KZO58886.1 KZO58871.1 KZO58871.1 nucS nucS gyrA gyrA gyrB gyrB recF recF KZO58627.1 KZO58627.1 dnaA dnaA KZO58729.1 KZO58729.1 KZO58731.1 KZO58731.1 KZO58732.1 KZO58732.1 KZO58733.1 KZO58733.1 KZO58565.1 KZO58565.1 A2U19_11860 A2U19_11860 KZO58405.1 KZO58405.1 KZO58406.1 KZO58406.1 KZO58407.1 KZO58407.1 KZO58408.1 KZO58408.1 KZO58485.1 KZO58485.1 A2U19_12365 A2U19_12365 A2U19_12460 A2U19_12460 KZO58091.1 KZO58091.1 KZO58096.1 KZO58096.1 KZO58127.1 KZO58127.1 KZO58141.1 KZO58141.1 A2U19_14000 A2U19_14000 KZO57868.1 KZO57868.1 KZO57898.1 KZO57898.1 KZO57906.1 KZO57906.1 KZO57908.1 KZO57908.1 KZO57914.1 KZO57914.1 dnaJ-2 dnaJ-2 recO recO dnaG dnaG KZO58074.1 KZO58074.1 KZO57989.1 KZO57989.1 dinB dinB KZO58026.1 KZO58026.1 ku ku KZO57668.1 KZO57668.1 KZO57669.1 KZO57669.1 KZO57823.1 KZO57823.1 dnaE2 dnaE2 KZO57830.1 KZO57830.1 KZO57831.1 KZO57831.1 KZO57833.1 KZO57833.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KZO58411.1Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
mutMDNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (303 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1188 aa)
xerC-2Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (319 aa)
KZO59817.13-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
A2U19_04915Transposase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
KZO59919.1Recombinase XerD; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
KZO59907.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
KZO59898.1Daunorubicin resistance protein DrrC; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa)
KZO59888.15'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
KZO59875.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (720 aa)
KZO59868.1Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
KZO59852.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
KZO59821.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
A2U19_04410Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (900 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (709 aa)
uvrAExcinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1022 aa)
KZO59995.13-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family. (210 aa)
KZO60072.1ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (823 aa)
KZO60026.1DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
KZO60100.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
KZO60099.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)
KZO60102.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
KZO60178.1DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (586 aa)
KZO60175.1ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
xerCSite-specific tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (316 aa)
KZO60132.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
KZO60261.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
KZO60245.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (277 aa)
KZO60235.1Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
KZO60259.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
KZO60223.1DNA gyrase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
KZO60222.1DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (1140 aa)
KZO60221.1ATP-dependent nuclease subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (986 aa)
KZO60203.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
KZO60332.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
uvrCExcinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (695 aa)
priAPrimosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (681 aa)
KZO60336.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (368 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa)
ruvCCrossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (219 aa)
KZO60372.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
KZO60376.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
A2U19_02010Transposase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
recADNA recombination/repair protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (367 aa)
lexARepressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (222 aa)
KZO60431.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
KZO60499.1Recombinase XerD; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
KZO60497.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
KZO60496.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
KZO60502.1TraA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1109 aa)
KZO60457.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
KZO60454.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (846 aa)
KZO60451.1DNA resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1220 aa)
KZO60577.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (89 aa)
KZO60556.1Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands. (205 aa)
nrdFRibonucleotide-diphosphate reductase subunit beta; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (338 aa)
KZO60619.1Ribonucleotide-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (693 aa)
KZO57614.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
KZO57613.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
KZO57611.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
KZO57588.1TraA protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1174 aa)
A2U19_00235Damage-inducible protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
A2U19_00225Transposase; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (252 aa)
KZO57633.1Invertase; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
KZO57637.1Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
KZO57646.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (667 aa)
KZO57644.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (472 aa)
KZO57638.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
KZO58387.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
A2U19_00060Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (128 aa)
KZO59618.1ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology. (756 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (232 aa)
KZO59627.1NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (304 aa)
ligADNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (726 aa)
KZO59579.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
dnaJMolecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (390 aa)
KZO59533.1Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
KZO59539.1NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
KZO59360.1Fatty acid-binding-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
KZO59378.1Mismatch-specific DNA-glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (447 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (77 aa)
KZO59460.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
KZO59417.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
KZO59203.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
A2U19_07815Adenylate cyclase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
KZO59314.1DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
KZO59318.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
KZO59077.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (394 aa)
KZO59098.1Adenine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
KZO59101.1DNA integrity scanning protein DisA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DisA family. (352 aa)
KZO59165.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
A2U19_08805Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (491 aa)
A2U19_08810Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (307 aa)
KZO58902.1DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (999 aa)
KZO58910.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (263 aa)
A2U19_09535Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (268 aa)
KZO59001.1DNA polymerase III subunit gamma/tau; Derived by automated computational analysis using gene prediction method: Protein Homology. (892 aa)
KZO59044.1Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
KZO59025.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
KZO58886.1Invertase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
KZO58871.1Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
nucSEndonuclease; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. (226 aa)
gyrADNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (842 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (705 aa)
recFDNA replication/repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (410 aa)
KZO58627.1DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (391 aa)
dnaAChromosomal replication initiation protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (501 aa)
KZO58729.1Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
KZO58731.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (607 aa)
KZO58732.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (117 aa)
KZO58733.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (253 aa)
KZO58565.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
A2U19_11860Transposase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
KZO58405.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (154 aa)
KZO58406.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
KZO58407.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
KZO58408.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
KZO58485.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
A2U19_12365Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (392 aa)
A2U19_12460Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
KZO58091.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
KZO58096.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (889 aa)
KZO58127.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
KZO58141.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
A2U19_14000Transposase; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (443 aa)
KZO57868.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
KZO57898.1Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
KZO57906.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
KZO57908.1Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
KZO57914.1DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
dnaJ-2Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (386 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (317 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (675 aa)
KZO58074.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (821 aa)
KZO57989.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (486 aa)
KZO58026.1DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)
kuKu protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (365 aa)
KZO57668.1ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily. (1108 aa)
KZO57669.1ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily. (1093 aa)
KZO57823.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
dnaE2Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1049 aa)
KZO57830.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
KZO57831.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
KZO57833.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
Your Current Organism:
Dietzia maris
NCBI taxonomy Id: 37915
Other names: ATCC 35013, AUCNM A-593, AUCNM:A:593, Brevibacterium maris, CCUG 44488, CIP 104188, D. maris, DSM 43672, IEGM 55, IFO 15801, IMV 195, JCM 6166, LMG 5361, LMG:5361, NBRC 15801, NRRL B-16941, NRRL:B:16941, Rhodococcus maris, VKM Ac-593, VKM:Ac:593
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