STRINGSTRING
KMO72147.1 KMO72147.1 KMO72154.1 KMO72154.1 whiB4_2 whiB4_2 dnaE2 dnaE2 sigJ_1 sigJ_1 KMO71856.1 KMO71856.1 KMO71857.1 KMO71857.1 KMO71860.1 KMO71860.1 KMO71861.1 KMO71861.1 sigL sigL ylaC ylaC rpoC rpoC rpoB rpoB KMO71780.1 KMO71780.1 KMO71628.1 KMO71628.1 rpoA rpoA sigD sigD mepM_4 mepM_4 KMO71278.1 KMO71278.1 dgt_2 dgt_2 KMO70220.1 KMO70220.1 sigH_3 sigH_3 sigM_1 sigM_1 kynB kynB sigM_2 sigM_2 sigG_2 sigG_2 KMO70705.1 KMO70705.1 KMO70918.1 KMO70918.1 phoR_2 phoR_2 KMO69672.1 KMO69672.1 sigW_2 sigW_2 KMO68709.1 KMO68709.1 KMO68781.1 KMO68781.1 KMO67206.1 KMO67206.1 KMO67207.1 KMO67207.1 sigE sigE dcuR dcuR sigJ_2 sigJ_2 KMO67581.1 KMO67581.1 rskA rskA sigK sigK rpmA rpmA dgt_1 dgt_1 dnaG dnaG sigG_1 sigG_1 KMO83455.1 KMO83455.1 KMO83343.1 KMO83343.1 rpoE_1 rpoE_1 KMO82508.1 KMO82508.1 rpoE_2 rpoE_2 KMO82556.1 KMO82556.1 rpoE_3 rpoE_3 KMO82673.1 KMO82673.1 KMO82276.1 KMO82276.1 sigF_1 sigF_1 rsbW rsbW KMO81096.1 KMO81096.1 cnrH cnrH KMO80680.1 KMO80680.1 mepM_2 mepM_2 KMO80302.1 KMO80302.1 KMO79890.1 KMO79890.1 dnaE dnaE rpoZ rpoZ sigH_1 sigH_1 KMO78226.1 KMO78226.1 sigF_2 sigF_2 rnj rnj KMO76718.1 KMO76718.1 sigW_1 sigW_1 KMO76804.1 KMO76804.1 KMO76849.1 KMO76849.1 KMO76929.1 KMO76929.1 KMO75560.1 KMO75560.1 citT citT whiB4_1 whiB4_1 KMO75388.1 KMO75388.1 sigH_2 sigH_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KMO72147.1Hypothetical protein. (211 aa)
KMO72154.1Hypothetical protein. (738 aa)
whiB4_2Transcriptional regulator WhiB4; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (118 aa)
dnaE2Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1098 aa)
sigJ_1ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (302 aa)
KMO71856.1Hypothetical protein. (45 aa)
KMO71857.1Transposase. (61 aa)
KMO71860.1Hypothetical protein. (233 aa)
KMO71861.1Transposase. (102 aa)
sigLECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
ylaCRNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1317 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1159 aa)
KMO71780.1NYN domain protein. (300 aa)
KMO71628.1Hypothetical protein. (74 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (350 aa)
sigDECF RNA polymerase sigma factor SigD. (132 aa)
mepM_4Murein DD-endopeptidase MepM. (340 aa)
KMO71278.1Transposase. (108 aa)
dgt_2Deoxyguanosinetriphosphate triphosphohydrolase. (325 aa)
KMO70220.1Hypothetical protein. (811 aa)
sigH_3ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
sigM_1RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
kynBKynurenine formamidase. (257 aa)
sigM_2ECF RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
sigG_2ECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (362 aa)
KMO70705.1NYN domain protein. (236 aa)
KMO70918.1Hypothetical protein. (173 aa)
phoR_2Alkaline phosphatase synthesis sensor protein PhoR. (151 aa)
KMO69672.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (406 aa)
sigW_2ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (460 aa)
KMO68709.1Putative cyclase. (332 aa)
KMO68781.1Hypothetical protein. (96 aa)
KMO67206.1Hypothetical protein. (90 aa)
KMO67207.1Hypothetical protein. (145 aa)
sigEECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (264 aa)
dcuRTranscriptional regulatory protein DcuR. (230 aa)
sigJ_2ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (294 aa)
KMO67581.1Zinc ribbon domain protein. (113 aa)
rskAAnti-sigma-K factor RskA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigK. ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut extracytoplasmically (site-1 protease, S1P), then within the membrane itself (site-2 protease, S2P, Rip1), while cytoplasmic proteases finish degrading the [...] (238 aa)
sigKECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
rpmA50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (88 aa)
dgt_1Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily. (442 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (647 aa)
sigG_1ECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (329 aa)
KMO83455.1Hypothetical protein. (215 aa)
KMO83343.1Transposase. (103 aa)
rpoE_1ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
KMO82508.1Hypothetical protein. (174 aa)
rpoE_2ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (211 aa)
KMO82556.1Hypothetical protein. (89 aa)
rpoE_3ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa)
KMO82673.1Hypothetical protein. (723 aa)
KMO82276.1Hypothetical protein. (250 aa)
sigF_1RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family. (241 aa)
rsbWAnti-sigma-F factor RsbW. (143 aa)
KMO81096.1Hypothetical protein. (91 aa)
cnrHRNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
KMO80680.1Transposase. (102 aa)
mepM_2Murein DD-endopeptidase MepM. (339 aa)
KMO80302.1Hypothetical protein. (86 aa)
KMO79890.1Transposase. (98 aa)
dnaEDNA polymerase III subunit alpha. (1179 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (104 aa)
sigH_1ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
KMO78226.1Hypothetical protein. (314 aa)
sigF_2RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family. (240 aa)
rnjPutative ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa)
KMO76718.1Hypothetical protein. (105 aa)
sigW_1ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)
KMO76804.1Hypothetical protein. (136 aa)
KMO76849.1Hypothetical protein. (137 aa)
KMO76929.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (418 aa)
KMO75560.1Hypothetical protein. (167 aa)
citTTranscriptional regulatory protein CitT. (221 aa)
whiB4_1Transcriptional regulator WhiB4; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (100 aa)
KMO75388.1Hypothetical protein. (148 aa)
sigH_2ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (253 aa)
Your Current Organism:
Mycolicibacterium chlorophenolicum
NCBI taxonomy Id: 37916
Other names: ATCC 49826, CIP 104189, DSM 43826, HAMBI 2278, IEGM 559, IFO 15527, JCM 7439, M. chlorophenolicum, Mycobacterium chlorophenolicum, Mycobacterium chlorophenolicus, Mycobacterium sp. ATCC 25793, NBRC 15527, NRRL B-16528, Rhodococcus chlorophenolicus, Rhodococcus chlorophenolicus (strain PCP-1), strain PCP-1, strain PCP-I
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