STRINGSTRING
sigJ_2 sigJ_2 rpoE_2 rpoE_2 sigD sigD ylaC ylaC sigJ_1 sigJ_1 sigH_2 sigH_2 KMO76929.1 KMO76929.1 sigW_1 sigW_1 sigH_1 sigH_1 rpoE_3 rpoE_3 cnrH cnrH sigM_2 sigM_2 sigG_2 sigG_2 KMO69672.1 KMO69672.1 sigE sigE rpoE_1 rpoE_1 sigG_1 sigG_1 sigM_1 sigM_1 sigH_3 sigH_3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sigJ_2ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (294 aa)
rpoE_2ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (211 aa)
sigDECF RNA polymerase sigma factor SigD. (132 aa)
ylaCRNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
sigJ_1ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (302 aa)
sigH_2ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (253 aa)
KMO76929.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (418 aa)
sigW_1ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (219 aa)
sigH_1ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
rpoE_3ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa)
cnrHRNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
sigM_2ECF RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
sigG_2ECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (362 aa)
KMO69672.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (406 aa)
sigEECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (264 aa)
rpoE_1ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
sigG_1ECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (329 aa)
sigM_1RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
sigH_3ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
Your Current Organism:
Mycolicibacterium chlorophenolicum
NCBI taxonomy Id: 37916
Other names: ATCC 49826, CIP 104189, DSM 43826, HAMBI 2278, IEGM 559, IFO 15527, JCM 7439, M. chlorophenolicum, Mycobacterium chlorophenolicum, Mycobacterium chlorophenolicus, Mycobacterium sp. ATCC 25793, NBRC 15527, NRRL B-16528, Rhodococcus chlorophenolicus, Rhodococcus chlorophenolicus (strain PCP-1), strain PCP-1, strain PCP-I
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