STRINGSTRING
sigF_1 sigF_1 ylaC ylaC sigD sigD sigH_3 sigH_3 sigM_1 sigM_1 sigG_2 sigG_2 sigE sigE sigJ_2 sigJ_2 sigK sigK sigH_2 sigH_2 sigB sigB sigA sigA sigF_2 sigF_2 sigH_1 sigH_1 cnrH cnrH rpoE_3 rpoE_3 rpoE_1 rpoE_1 sigG_1 sigG_1 sigL sigL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sigF_1RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family. (241 aa)
ylaCRNA polymerase sigma factor YlaC; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)
sigDECF RNA polymerase sigma factor SigD. (132 aa)
sigH_3ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
sigM_1RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)
sigG_2ECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (362 aa)
sigEECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily. (264 aa)
sigJ_2ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. (294 aa)
sigKECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)
sigH_2ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (253 aa)
sigBRNA polymerase sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (319 aa)
sigARNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (503 aa)
sigF_2RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family. (240 aa)
sigH_1ECF RNA polymerase sigma factor SigH; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
cnrHRNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
rpoE_3ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa)
rpoE_1ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
sigG_1ECF RNA polymerase sigma factor SigG; Belongs to the sigma-70 factor family. ECF subfamily. (329 aa)
sigLECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
Your Current Organism:
Mycolicibacterium chlorophenolicum
NCBI taxonomy Id: 37916
Other names: ATCC 49826, CIP 104189, DSM 43826, HAMBI 2278, IEGM 559, IFO 15527, JCM 7439, M. chlorophenolicum, Mycobacterium chlorophenolicum, Mycobacterium chlorophenolicus, Mycobacterium sp. ATCC 25793, NBRC 15527, NRRL B-16528, Rhodococcus chlorophenolicus, Rhodococcus chlorophenolicus (strain PCP-1), strain PCP-1, strain PCP-I
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