STRINGSTRING
AMM31215.1 AMM31215.1 AMM31903.1 AMM31903.1 AMM31986.1 AMM31986.1 dapB dapB dapA dapA dapF dapF AMM33218.1 AMM33218.1 AMM33741.1 AMM33741.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMM31215.1Pfam:pfam00696 Amino acid kinase family; Belongs to the aspartokinase family. (437 aa)
AMM31903.1Pfam:pfam00701 Dihydrodipicolinate synthetase family; Belongs to the DapA family. (307 aa)
AMM31986.1Pfam:pfam00701 Dihydrodipicolinate synthetase family; Belongs to the DapA family. (314 aa)
dapB4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (252 aa)
dapA4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (302 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (313 aa)
AMM33218.1Pfam:pfam02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain. (395 aa)
AMM33741.1Pfam:pfam02774 Semialdehyde dehydrogenase, dimerization domain; Belongs to the aspartate-semialdehyde dehydrogenase family. (378 aa)
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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