STRINGSTRING
AMM30816.1 AMM30816.1 AMM30818.1 AMM30818.1 AMM30819.1 AMM30819.1 AMM30820.1 AMM30820.1 AMM30821.1 AMM30821.1 AMM30822.1 AMM30822.1 AMM30823.1 AMM30823.1 AMM30824.1 AMM30824.1 AMM30825.1 AMM30825.1 AMM30826.1 AMM30826.1 AMM30827.1 AMM30827.1 ureA ureA ureB ureB ureC ureC ureE ureE ureF ureF ureG ureG ureD ureD rnz rnz AMM30836.1 AMM30836.1 AMM30837.1 AMM30837.1 AMM30838.1 AMM30838.1 idi idi ispD ispD ispF ispF AMM31471.1 AMM31471.1 cysS cysS AMM31473.1 AMM31473.1 AMM32103.1 AMM32103.1 ispE ispE AMM32309.1 AMM32309.1 dxr dxr AMM32311.1 AMM32311.1 AMM32312.1 AMM32312.1 ispG ispG AMM32314.1 AMM32314.1 AMM32315.1 AMM32315.1 AMM32473.1 AMM32473.1 AMM32528.1 AMM32528.1 AMM32529.1 AMM32529.1 AMM32530.1 AMM32530.1 AMM32531.1 AMM32531.1 AMM32532.1 AMM32532.1 dxs dxs AMM32609.1 AMM32609.1 AMM32758.1 AMM32758.1 ispH ispH AMM33424.1 AMM33424.1 xseA xseA xseB xseB AMM33824.1 AMM33824.1 AMM33825.1 AMM33825.1 menG menG AMM33827.1 AMM33827.1 AMM33828.1 AMM33828.1 menD menD menC menC menB menB AMM33899.1 AMM33899.1 menA menA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMM30816.1Membrane protein; Pfam:pfam03176 MMPL family. (754 aa)
AMM30818.1Membrane protein. (293 aa)
AMM30819.1Trans-hexaprenyltranstransferase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (376 aa)
AMM30820.1Pfam:pfam00494 Squalene/phytoene synthase. (304 aa)
AMM30821.1Phytoene desaturase; Pfam:pfam01593 Flavin containing amine oxidoreductase. (564 aa)
AMM30822.1Lycopene cyclase. (111 aa)
AMM30823.1Hypothetical protein. (125 aa)
AMM30824.1Prenyltransferase; Pfam:pfam01040 UbiA prenyltransferase family. (304 aa)
AMM30825.1Pfam:pfam03441 FAD binding domain of DNA photolyase. (501 aa)
AMM30826.1Pfam:pfam12802 MarR family. (170 aa)
AMM30827.1Hypothetical protein. (70 aa)
ureAPfam:pfam00547 Urease, gamma subunit; Belongs to the urease gamma subunit family. (100 aa)
ureBPfam:pfam00699 Urease beta subunit; Belongs to the urease beta subunit family. (102 aa)
ureCPfam:pfam00449 Urease alpha-subunit, N-terminal domain. (575 aa)
ureEUrease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. (161 aa)
ureFHypothetical protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (230 aa)
ureGUrease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. (203 aa)
ureDHypothetical protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (277 aa)
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (306 aa)
AMM30836.1Redox-sensitive transcriptional activator SoxR; Pfam:pfam13411 MerR HTH family regulatory protein. (148 aa)
AMM30837.1Pfam:pfam01613 Flavin reductase like domain. (184 aa)
AMM30838.1Hypothetical protein. (204 aa)
idiIsopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). (178 aa)
ispD2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). (255 aa)
ispF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). (161 aa)
AMM31471.1Putative lipoprotein. (110 aa)
cysSCysteine--tRNA ligase; Pfam:pfam01406 tRNA synthetases class I (C) catalytic domain; Belongs to the class-I aminoacyl-tRNA synthetase family. (506 aa)
AMM31473.1Pfam:pfam00588 SpoU rRNA Methylase family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (334 aa)
AMM32103.1UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (253 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (322 aa)
AMM32309.1AraC family transcriptional regulator; Pfam:pfam06445 GyrI-like small molecule binding domain. (162 aa)
dxr1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (409 aa)
AMM32311.1Peptidase; Pfam:pfam02163 Peptidase family M50. (449 aa)
AMM32312.1Pfam:pfam03795 YCII-related domain. (100 aa)
ispG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (388 aa)
AMM32314.1Acetyltransferase; Pfam:pfam13312 Domain of unknown function (DUF4081). (273 aa)
AMM32315.1Hypothetical protein. (251 aa)
AMM32473.1Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (369 aa)
AMM32528.1Zn-dependent protease with chaperone function; Pfam:pfam01435 Peptidase family M48. (323 aa)
AMM32529.1Transcriptional regulator; Pfam:pfam03965 Penicillinase repressor. (120 aa)
AMM32530.1Pfam:pfam01654 Bacterial Cytochrome Ubiquinol Oxidase. (543 aa)
AMM32531.1Pfam:pfam02322 Cytochrome oxidase subunit II. (350 aa)
AMM32532.1Pfam:pfam00005 ABC transporter. (1138 aa)
dxs1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (662 aa)
AMM32609.1Thioesterase; Pfam:pfam03061 Thioesterase superfamily. (198 aa)
AMM32758.1UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. (276 aa)
ispH4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. (364 aa)
AMM33424.1Hypothetical protein. (259 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (460 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa)
AMM33824.1Geranylgeranyl pyrophosphate synthase; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (367 aa)
AMM33825.1Drug:proton antiporter; Pfam:pfam01494 FAD binding domain. (443 aa)
menGUbiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (238 aa)
AMM33827.1Pfam:pfam08240 Alcohol dehydrogenase GroES-like domain. (338 aa)
AMM33828.1Isochorismate synthase; Pfam:pfam00425 chorismate binding enzyme. (446 aa)
menD2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. (565 aa)
menCO-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). (340 aa)
menBNaphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. (323 aa)
AMM33899.1AMP-dependent synthetase; Pfam:pfam00501 AMP-binding enzyme. (389 aa)
menA1,4-dihydroxy-2-naphthoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. (293 aa)
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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