Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMM30799.1 | AMM34677.1 | SA2016_0094 | SA2016_4024 | ATPase, P-type, HAD superfamily, subfamily IC family protein; Pfam:pfam00122 E1-E2 ATPase. | Carbonate dehydratase; Pfam:pfam00122 E1-E2 ATPase. | 0.406 |
| AMM30984.1 | clpX | SA2016_0283 | SA2016_2338 | NDP-hexose 4-ketoreductase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | ATP-dependent protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.490 |
| AMM30984.1 | ruvB | SA2016_0283 | SA2016_2173 | NDP-hexose 4-ketoreductase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.536 |
| AMM30984.1 | ychF | SA2016_0283 | SA2016_2756 | NDP-hexose 4-ketoreductase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.426 |
| AMM31329.1 | clpX | SA2016_0638 | SA2016_2338 | ATPase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | ATP-dependent protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.490 |
| AMM31329.1 | ruvA | SA2016_0638 | SA2016_2174 | ATPase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.403 |
| AMM31329.1 | ruvB | SA2016_0638 | SA2016_2173 | ATPase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.570 |
| AMM31329.1 | uvrA | SA2016_0638 | SA2016_1953 | ATPase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.437 |
| AMM31329.1 | ychF | SA2016_0638 | SA2016_2756 | ATPase; Pfam:pfam07724 AAA domain (Cdc48 subfamily); Belongs to the ClpA/ClpB family. | GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.435 |
| AMM31531.1 | arc | SA2016_0843 | SA2016_2034 | Hypothetical protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA). | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.692 |
| AMM31697.1 | arc | SA2016_1012 | SA2016_2034 | AAA ATPase, central domain protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA). | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.613 |
| AMM31791.1 | AMM32736.1 | SA2016_1109 | SA2016_2066 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | UvrABC system protein A; Pfam:pfam00005 ABC transporter. | 0.664 |
| AMM31791.1 | AMM33084.1 | SA2016_1109 | SA2016_2415 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | ATP-dependent DNA helicase RecG; Pfam:pfam00270 DEAD/DEAH box helicase. | 0.620 |
| AMM31791.1 | AMM33336.1 | SA2016_1109 | SA2016_2671 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | ATP-dependent DNA helicase; Pfam:pfam00580 UvrD/REP helicase N-terminal domain. | 0.964 |
| AMM31791.1 | AMM34687.1 | SA2016_1109 | SA2016_4034 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | Helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.538 |
| AMM31791.1 | ruvB | SA2016_1109 | SA2016_2173 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.552 |
| AMM31791.1 | uvrA | SA2016_1109 | SA2016_1953 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.752 |
| AMM31791.1 | uvrB | SA2016_1109 | SA2016_1943 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] | 0.938 |
| AMM31791.1 | ychF | SA2016_1109 | SA2016_2756 | ATP-dependent DNA helicase PcrA; Pfam:pfam13361 UvrD-like helicase C-terminal domain. | GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. | 0.405 |
| AMM31979.1 | AMM33336.1 | SA2016_1299 | SA2016_2671 | Hypothetical protein; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily. | ATP-dependent DNA helicase; Pfam:pfam00580 UvrD/REP helicase N-terminal domain. | 0.411 |
page 1 of 7