(13 nodes) Mixed, incl. Polysomal ribosome, and Ribosomal protein S17e network (Propithecus coquereli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPLP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (318 aa)
	RPL8	Ribosomal protein L8. (257 aa)
	RPS5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (225 aa)
	LOC105822084	Ribos_L4_asso_C domain-containing protein. (381 aa)
	RPS28	Ribosomal protein S28. (69 aa)
	RPL29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (167 aa)
	EEF2	Eukaryotic translation elongation factor 2. (858 aa)
	RACK1	Receptor for activated C kinase 1. (317 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	RPL18A	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	RPL18	Ribosomal protein L18. (188 aa)
	RPL10	Ribosomal_L16 domain-containing protein. (214 aa)
	LOC105812058	Uncharacterized protein. (118 aa)

Your Current Organism:

Propithecus coquereli

NCBI taxonomy Id: 379532
Other names: P. coquereli, Propithecus verreauxi coquereli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF2	LOC105812058	ENSPCOP00000022857	ENSPCOP00000031663	Eukaryotic translation elongation factor 2.	Uncharacterized protein.	0.996
EEF2	LOC105822084	ENSPCOP00000022857	ENSPCOP00000011637	Eukaryotic translation elongation factor 2.	Ribos_L4_asso_C domain-containing protein.	0.996
EEF2	RACK1	ENSPCOP00000022857	ENSPCOP00000024402	Eukaryotic translation elongation factor 2.	Receptor for activated C kinase 1.	0.999
EEF2	RPL10	ENSPCOP00000022857	ENSPCOP00000028900	Eukaryotic translation elongation factor 2.	Ribosomal_L16 domain-containing protein.	0.999
EEF2	RPL13	ENSPCOP00000022857	ENSPCOP00000024863	Eukaryotic translation elongation factor 2.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
EEF2	RPL18	ENSPCOP00000022857	ENSPCOP00000027648	Eukaryotic translation elongation factor 2.	Ribosomal protein L18.	0.999
EEF2	RPL18A	ENSPCOP00000022857	ENSPCOP00000025189	Eukaryotic translation elongation factor 2.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
EEF2	RPL29	ENSPCOP00000022857	ENSPCOP00000016698	Eukaryotic translation elongation factor 2.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.994
EEF2	RPL8	ENSPCOP00000022857	ENSPCOP00000008698	Eukaryotic translation elongation factor 2.	Ribosomal protein L8.	0.996
EEF2	RPLP0	ENSPCOP00000022857	ENSPCOP00000008425	Eukaryotic translation elongation factor 2.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
EEF2	RPS28	ENSPCOP00000022857	ENSPCOP00000013475	Eukaryotic translation elongation factor 2.	Ribosomal protein S28.	0.998
EEF2	RPS5	ENSPCOP00000022857	ENSPCOP00000009304	Eukaryotic translation elongation factor 2.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
LOC105812058	EEF2	ENSPCOP00000031663	ENSPCOP00000022857	Uncharacterized protein.	Eukaryotic translation elongation factor 2.	0.996
LOC105812058	LOC105822084	ENSPCOP00000031663	ENSPCOP00000011637	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.998
LOC105812058	RACK1	ENSPCOP00000031663	ENSPCOP00000024402	Uncharacterized protein.	Receptor for activated C kinase 1.	0.999
LOC105812058	RPL10	ENSPCOP00000031663	ENSPCOP00000028900	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.999
LOC105812058	RPL13	ENSPCOP00000031663	ENSPCOP00000024863	Uncharacterized protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
LOC105812058	RPL18	ENSPCOP00000031663	ENSPCOP00000027648	Uncharacterized protein.	Ribosomal protein L18.	0.999
LOC105812058	RPL18A	ENSPCOP00000031663	ENSPCOP00000025189	Uncharacterized protein.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
LOC105812058	RPL29	ENSPCOP00000031663	ENSPCOP00000016698	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999