(14 nodes) Organellar large ribosomal subunit, and Ribosomal protein S11 network (Propithecus coquereli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MRPL9	Mitochondrial ribosomal protein L9. (268 aa)
	MRPS16	Mitochondrial ribosomal protein S16. (135 aa)
	MRPL19	Uncharacterized protein. (177 aa)
	TUFM	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (455 aa)
	MRPS6	Mitochondrial ribosomal protein S6. (125 aa)
	MRPL27	Mitochondrial ribosomal protein L27. (148 aa)
	MRPL21	Mitochondrial ribosomal protein L21. (185 aa)
	MRPL4	Mitochondrial ribosomal protein L4. (284 aa)
	MRPL12	Mitochondrial ribosomal protein L12. (198 aa)
	MRPS11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (194 aa)
	MRPL32	Mitochondrial ribosomal protein L32. (188 aa)
	MRPL33	Mitochondrial ribosomal protein L33. (65 aa)
	MRPL16	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (251 aa)
	RPL35	Ribosomal protein L35. (123 aa)

Your Current Organism:

Propithecus coquereli

NCBI taxonomy Id: 379532
Other names: P. coquereli, Propithecus verreauxi coquereli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MRPL12	MRPL16	ENSPCOP00000011012	ENSPCOP00000025849	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.996
MRPL12	MRPL19	ENSPCOP00000011012	ENSPCOP00000003607	Mitochondrial ribosomal protein L12.	Uncharacterized protein.	0.999
MRPL12	MRPL21	ENSPCOP00000011012	ENSPCOP00000008245	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L21.	0.999
MRPL12	MRPL27	ENSPCOP00000011012	ENSPCOP00000006632	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L27.	0.999
MRPL12	MRPL32	ENSPCOP00000011012	ENSPCOP00000016774	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L32.	0.999
MRPL12	MRPL33	ENSPCOP00000011012	ENSPCOP00000017303	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L33.	0.999
MRPL12	MRPL4	ENSPCOP00000011012	ENSPCOP00000010529	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L4.	0.998
MRPL12	MRPL9	ENSPCOP00000011012	ENSPCOP00000002234	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein L9.	0.999
MRPL12	MRPS11	ENSPCOP00000011012	ENSPCOP00000015043	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.994
MRPL12	MRPS16	ENSPCOP00000011012	ENSPCOP00000003270	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein S16.	0.999
MRPL12	MRPS6	ENSPCOP00000011012	ENSPCOP00000005668	Mitochondrial ribosomal protein L12.	Mitochondrial ribosomal protein S6.	0.999
MRPL12	RPL35	ENSPCOP00000011012	ENSPCOP00000028260	Mitochondrial ribosomal protein L12.	Ribosomal protein L35.	0.999
MRPL12	TUFM	ENSPCOP00000011012	ENSPCOP00000004145	Mitochondrial ribosomal protein L12.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.998
MRPL16	MRPL12	ENSPCOP00000025849	ENSPCOP00000011012	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L12.	0.996
MRPL16	MRPL19	ENSPCOP00000025849	ENSPCOP00000003607	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Uncharacterized protein.	0.999
MRPL16	MRPL21	ENSPCOP00000025849	ENSPCOP00000008245	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L21.	0.999
MRPL16	MRPL27	ENSPCOP00000025849	ENSPCOP00000006632	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L27.	0.998
MRPL16	MRPL32	ENSPCOP00000025849	ENSPCOP00000016774	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L32.	0.998
MRPL16	MRPL33	ENSPCOP00000025849	ENSPCOP00000017303	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L33.	0.999
MRPL16	MRPL4	ENSPCOP00000025849	ENSPCOP00000010529	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Mitochondrial ribosomal protein L4.	0.998