9 items (Propithecus coquereli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ASPH	Aspartate beta-hydroxylase. (687 aa)
	STIM1	Stromal interaction molecule 1. (784 aa)
	KCNIP2	Potassium voltage-gated channel interacting protein 2. (285 aa)
	KCNMB3	Potassium calcium-activated channel subfamily M regulatory beta subunit 3. (277 aa)
	CASR	Calcium sensing receptor. (1076 aa)
	RYR2	Ryanodine receptor 2. (4825 aa)
	KCNMB4	Potassium calcium-activated channel subfamily M regulatory beta subunit 4. (210 aa)
	KCNMB1	Potassium calcium-activated channel subfamily M regulatory beta subunit 1. (191 aa)
	KCNMB2	KcnmB2_inactiv domain-containing protein. (235 aa)

Your Current Organism:

Propithecus coquereli

NCBI taxonomy Id: 379532
Other names: P. coquereli, Propithecus verreauxi coquereli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPH	RYR2	ENSPCOP00000021855	ENSPCOP00000010660	Aspartate beta-hydroxylase.	Ryanodine receptor 2.	0.940
KCNIP2	RYR2	ENSPCOP00000024695	ENSPCOP00000010660	Potassium voltage-gated channel interacting protein 2.	Ryanodine receptor 2.	0.504
KCNMB1	KCNMB2	ENSPCOP00000019029	ENSPCOP00000019227	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	KcnmB2_inactiv domain-containing protein.	0.849
KCNMB1	KCNMB3	ENSPCOP00000019029	ENSPCOP00000002281	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	Potassium calcium-activated channel subfamily M regulatory beta subunit 3.	0.885
KCNMB1	KCNMB4	ENSPCOP00000019029	ENSPCOP00000015507	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	Potassium calcium-activated channel subfamily M regulatory beta subunit 4.	0.912
KCNMB2	KCNMB1	ENSPCOP00000019227	ENSPCOP00000019029	KcnmB2_inactiv domain-containing protein.	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	0.849
KCNMB2	KCNMB3	ENSPCOP00000019227	ENSPCOP00000002281	KcnmB2_inactiv domain-containing protein.	Potassium calcium-activated channel subfamily M regulatory beta subunit 3.	0.851
KCNMB2	KCNMB4	ENSPCOP00000019227	ENSPCOP00000015507	KcnmB2_inactiv domain-containing protein.	Potassium calcium-activated channel subfamily M regulatory beta subunit 4.	0.853
KCNMB3	KCNMB1	ENSPCOP00000002281	ENSPCOP00000019029	Potassium calcium-activated channel subfamily M regulatory beta subunit 3.	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	0.885
KCNMB3	KCNMB2	ENSPCOP00000002281	ENSPCOP00000019227	Potassium calcium-activated channel subfamily M regulatory beta subunit 3.	KcnmB2_inactiv domain-containing protein.	0.851
KCNMB4	KCNMB1	ENSPCOP00000015507	ENSPCOP00000019029	Potassium calcium-activated channel subfamily M regulatory beta subunit 4.	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	0.912
KCNMB4	KCNMB2	ENSPCOP00000015507	ENSPCOP00000019227	Potassium calcium-activated channel subfamily M regulatory beta subunit 4.	KcnmB2_inactiv domain-containing protein.	0.853
RYR2	ASPH	ENSPCOP00000010660	ENSPCOP00000021855	Ryanodine receptor 2.	Aspartate beta-hydroxylase.	0.940
RYR2	KCNIP2	ENSPCOP00000010660	ENSPCOP00000024695	Ryanodine receptor 2.	Potassium voltage-gated channel interacting protein 2.	0.504