(35 nodes) 90S preribosome network (Propithecus coquereli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RRP36	Ribosomal RNA processing 36. (250 aa)
	UTP18	UTP18 small subunit processome component. (556 aa)
	NOL6	Nucleolar protein 6. (1146 aa)
	NOC2L	NOC2 like nucleolar associated transcriptional repressor. (744 aa)
	TBL3	Transducin beta like 3. (808 aa)
	CMSS1	Cms1 ribosomal small subunit homolog. (278 aa)
	IMP4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	GNL2	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (730 aa)
	NSA2	Uncharacterized protein. (260 aa)
	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (662 aa)
	PES1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (588 aa)
	RRP7A	Ribosomal RNA processing 7 homolog A. (280 aa)
	PWP2	Uncharacterized protein. (919 aa)
	RPF2	Ribosome production factor 2 homolog. (283 aa)
	IMP3	IMP U3 small nucleolar ribonucleoprotein 3. (184 aa)
	ENSPCOP00000003934	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (530 aa)
	ENSPCOP00000003875	Uncharacterized protein. (40 aa)
	UTP6	UTP6 small subunit processome component. (598 aa)
	RCL1	RNA terminal phosphate cyclase like 1. (373 aa)
	HUNK	Hormonally up-regulated Neu-associated kinase. (714 aa)
	NOP14	NOP14 nucleolar protein. (853 aa)
	WDR12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (398 aa)
	WDR36	WD repeat domain 36. (820 aa)
	RSL24D1	TRASH domain-containing protein. (163 aa)
	NOC4L	Nucleolar complex associated 4 homolog. (516 aa)
	ENSPCOP00000018567	TRASH domain-containing protein. (165 aa)
	ENSPCOP00000019774	TRASH domain-containing protein. (151 aa)
	BOP1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (737 aa)
	ENSPCOP00000022366	DUF663 domain-containing protein. (140 aa)
	SRFBP1	Serum response factor binding protein 1. (429 aa)
	UTP20	UTP20 small subunit processome component. (2664 aa)
	WDR74	WD repeat domain 74. (384 aa)
	KRI1	KRI1 homolog. (679 aa)
	BMS1	Bms1-type G domain-containing protein. (1196 aa)
	PDCD11	Programmed cell death 11. (1558 aa)

Your Current Organism:

Propithecus coquereli

NCBI taxonomy Id: 379532
Other names: P. coquereli, Propithecus verreauxi coquereli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	BOP1	ENSPCOP00000023399	ENSPCOP00000022224	Bms1-type G domain-containing protein.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.910
BMS1	CMSS1	ENSPCOP00000023399	ENSPCOP00000016530	Bms1-type G domain-containing protein.	Cms1 ribosomal small subunit homolog.	0.524
BMS1	ENSPCOP00000003875	ENSPCOP00000023399	ENSPCOP00000003875	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.995
BMS1	ENSPCOP00000003934	ENSPCOP00000023399	ENSPCOP00000003934	Bms1-type G domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.990
BMS1	ENSPCOP00000018567	ENSPCOP00000023399	ENSPCOP00000018567	Bms1-type G domain-containing protein.	TRASH domain-containing protein.	0.668
BMS1	ENSPCOP00000019774	ENSPCOP00000023399	ENSPCOP00000019774	Bms1-type G domain-containing protein.	TRASH domain-containing protein.	0.668
BMS1	GNL2	ENSPCOP00000023399	ENSPCOP00000010424	Bms1-type G domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.938
BMS1	IMP3	ENSPCOP00000023399	ENSPCOP00000004194	Bms1-type G domain-containing protein.	IMP U3 small nucleolar ribonucleoprotein 3.	0.985
BMS1	IMP4	ENSPCOP00000023399	ENSPCOP00000012624	Bms1-type G domain-containing protein.	IMP U3 small nucleolar ribonucleoprotein 4.	0.989
BMS1	KRI1	ENSPCOP00000023399	ENSPCOP00000001269	Bms1-type G domain-containing protein.	KRI1 homolog.	0.868
BMS1	MPHOSPH10	ENSPCOP00000023399	ENSPCOP00000009808	Bms1-type G domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.990
BMS1	NOC2L	ENSPCOP00000023399	ENSPCOP00000015810	Bms1-type G domain-containing protein.	NOC2 like nucleolar associated transcriptional repressor.	0.905
BMS1	NOC4L	ENSPCOP00000023399	ENSPCOP00000017692	Bms1-type G domain-containing protein.	Nucleolar complex associated 4 homolog.	0.987
BMS1	NOL6	ENSPCOP00000023399	ENSPCOP00000015091	Bms1-type G domain-containing protein.	Nucleolar protein 6.	0.997
BMS1	NOP14	ENSPCOP00000023399	ENSPCOP00000030394	Bms1-type G domain-containing protein.	NOP14 nucleolar protein.	0.996
BMS1	PDCD11	ENSPCOP00000023399	ENSPCOP00000022464	Bms1-type G domain-containing protein.	Programmed cell death 11.	0.996
BMS1	PES1	ENSPCOP00000023399	ENSPCOP00000009664	Bms1-type G domain-containing protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.910
BMS1	PWP2	ENSPCOP00000023399	ENSPCOP00000004504	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.995
BMS1	RCL1	ENSPCOP00000023399	ENSPCOP00000003182	Bms1-type G domain-containing protein.	RNA terminal phosphate cyclase like 1.	0.995
BMS1	RPF2	ENSPCOP00000023399	ENSPCOP00000004460	Bms1-type G domain-containing protein.	Ribosome production factor 2 homolog.	0.919