Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DNA2 | FEN1 | ENSPCOP00000028880 | ENSPCOP00000004555 | Uncharacterized protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.976 |
| DNA2 | LIG1 | ENSPCOP00000028880 | ENSPCOP00000030243 | Uncharacterized protein. | DNA ligase. | 0.671 |
| DNA2 | LOC105824103 | ENSPCOP00000028880 | ENSPCOP00000019020 | Uncharacterized protein. | Uncharacterized protein. | 0.847 |
| DNA2 | MEIOB | ENSPCOP00000028880 | ENSPCOP00000000779 | Uncharacterized protein. | Meiosis specific with OB-fold. | 0.973 |
| DNA2 | PCNA | ENSPCOP00000028880 | ENSPCOP00000008972 | Uncharacterized protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.778 |
| DNA2 | POLA1 | ENSPCOP00000028880 | ENSPCOP00000012099 | Uncharacterized protein. | DNA polymerase. | 0.921 |
| DNA2 | POLA2 | ENSPCOP00000028880 | ENSPCOP00000015761 | Uncharacterized protein. | DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. | 0.849 |
| DNA2 | POLD1 | ENSPCOP00000028880 | ENSPCOP00000015021 | Uncharacterized protein. | DNA polymerase. | 0.924 |
| DNA2 | POLD2 | ENSPCOP00000028880 | ENSPCOP00000023689 | Uncharacterized protein. | DNA polymerase delta 2, accessory subunit. | 0.871 |
| DNA2 | POLD3 | ENSPCOP00000028880 | ENSPCOP00000024678 | Uncharacterized protein. | DNA polymerase delta 3, accessory subunit. | 0.847 |
| DNA2 | POLD4 | ENSPCOP00000028880 | ENSPCOP00000023120 | Uncharacterized protein. | Uncharacterized protein. | 0.634 |
| DNA2 | PRIM1 | ENSPCOP00000028880 | ENSPCOP00000030047 | Uncharacterized protein. | DNA primase; Belongs to the eukaryotic-type primase small subunit family. | 0.877 |
| DNA2 | PRIM2 | ENSPCOP00000028880 | ENSPCOP00000030940 | Uncharacterized protein. | Uncharacterized protein. | 0.859 |
| DNA2 | RPA1 | ENSPCOP00000028880 | ENSPCOP00000000581 | Uncharacterized protein. | Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. | 0.983 |
| DNA2 | RPA3 | ENSPCOP00000028880 | ENSPCOP00000021293 | Uncharacterized protein. | Replication protein A3. | 0.715 |
| ENSPCOP00000024841 | FEN1 | ENSPCOP00000024841 | ENSPCOP00000004555 | Uncharacterized protein. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.976 |
| ENSPCOP00000024841 | LIG1 | ENSPCOP00000024841 | ENSPCOP00000030243 | Uncharacterized protein. | DNA ligase. | 0.671 |
| ENSPCOP00000024841 | LOC105824103 | ENSPCOP00000024841 | ENSPCOP00000019020 | Uncharacterized protein. | Uncharacterized protein. | 0.772 |
| ENSPCOP00000024841 | MEIOB | ENSPCOP00000024841 | ENSPCOP00000000779 | Uncharacterized protein. | Meiosis specific with OB-fold. | 0.973 |
| ENSPCOP00000024841 | PCNA | ENSPCOP00000024841 | ENSPCOP00000008972 | Uncharacterized protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.778 |
page 1 of 13