28 items (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDK48911.1	Anti-sigma-K factor rskA. (248 aa)
	SDK48933.1	RNA polymerase sigma-70 factor, ECF subfamily. (205 aa)
	SDK53217.1	Hypothetical protein. (481 aa)
	SDK53244.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
	SDK67988.1	Mycothiol system anti-sigma-R factor. (98 aa)
	SDK68007.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (259 aa)
	SDK88584.1	Uncaracterized surface protein containing fasciclin (FAS1) repeats. (210 aa)
	SDK88599.1	DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit. (501 aa)
	SDK88616.1	Anti-sigma-K factor RskA. (249 aa)
	SDK88628.1	RNA polymerase sigma-70 factor, ECF subfamily. (180 aa)
	SDK91212.1	RNA polymerase sigma-70 factor, ECF subfamily. (280 aa)
	SDL07975.1	Hypothetical protein. (66 aa)
	SDL07996.1	NlpC/P60 family protein. (329 aa)
	SDL08012.1	Hypothetical protein. (351 aa)
	SDL08032.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (322 aa)
	SDL22277.1	DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit. (499 aa)
	SDL34226.1	Hypothetical protein. (358 aa)
	SDL34236.1	HAD-superfamily subfamily IB hydrolase, TIGR01490. (301 aa)
	SDL34260.1	Hypothetical protein. (389 aa)
	SDL34276.1	RNA polymerase sigma-70 factor, ECF subfamily. (284 aa)
	SDL36974.1	Hypothetical protein. (298 aa)
	SDL36998.1	RNA polymerase sigma-70 factor, ECF subfamily. (210 aa)
	SDL39969.1	RNA polymerase sigma-70 factor, ECF subfamily. (179 aa)
	SDL39989.1	Hypothetical protein. (301 aa)
	SDL40010.1	RNA polymerase sigma-70 factor, ECF subfamily. (185 aa)
	SDL40035.1	Hypothetical protein. (410 aa)
	SDL46189.1	Hypothetical protein. (170 aa)
	SDL46204.1	RNA polymerase sigma-70 factor, ECF subfamily. (182 aa)

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK48911.1	SDK48933.1	SAMN05216298_0244	SAMN05216298_0245	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.983
SDK48911.1	SDK88599.1	SAMN05216298_0244	SAMN05216298_1841	Anti-sigma-K factor rskA.	DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.	0.525
SDK48911.1	SDK88628.1	SAMN05216298_0244	SAMN05216298_1843	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.970
SDK48911.1	SDL22277.1	SAMN05216298_0244	SAMN05216298_3129	Anti-sigma-K factor rskA.	DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.	0.535
SDK48911.1	SDL36998.1	SAMN05216298_0244	SAMN05216298_3650	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.460
SDK48911.1	SDL39969.1	SAMN05216298_0244	SAMN05216298_3816	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.470
SDK48911.1	SDL40010.1	SAMN05216298_0244	SAMN05216298_3818	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.467
SDK48911.1	SDL46204.1	SAMN05216298_0244	SAMN05216298_3922	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.494
SDK48933.1	SDK48911.1	SAMN05216298_0245	SAMN05216298_0244	RNA polymerase sigma-70 factor, ECF subfamily.	Anti-sigma-K factor rskA.	0.983
SDK48933.1	SDK53244.1	SAMN05216298_0245	SAMN05216298_0436	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.481
SDK48933.1	SDK67988.1	SAMN05216298_0245	SAMN05216298_1134	RNA polymerase sigma-70 factor, ECF subfamily.	Mycothiol system anti-sigma-R factor.	0.515
SDK48933.1	SDK88616.1	SAMN05216298_0245	SAMN05216298_1842	RNA polymerase sigma-70 factor, ECF subfamily.	Anti-sigma-K factor RskA.	0.971
SDK48933.1	SDL08032.1	SAMN05216298_0245	SAMN05216298_2624	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.485
SDK48933.1	SDL34260.1	SAMN05216298_0245	SAMN05216298_3513	RNA polymerase sigma-70 factor, ECF subfamily.	Hypothetical protein.	0.437
SDK48933.1	SDL34276.1	SAMN05216298_0245	SAMN05216298_3514	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.581
SDK48933.1	SDL36998.1	SAMN05216298_0245	SAMN05216298_3650	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.571
SDK48933.1	SDL39969.1	SAMN05216298_0245	SAMN05216298_3816	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.590
SDK48933.1	SDL40010.1	SAMN05216298_0245	SAMN05216298_3818	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.583
SDK48933.1	SDL46204.1	SAMN05216298_0245	SAMN05216298_3922	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.533
SDK53217.1	SDK53244.1	SAMN05216298_0435	SAMN05216298_0436	Hypothetical protein.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.768