86 items (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpoZ	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (90 aa)
	SDL76579.1	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (235 aa)
	SDL74868.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (325 aa)
	SDL68320.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (247 aa)
	SDL67638.1	Response regulator of citrate/malate metabolism. (219 aa)
	SDL67020.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
	SDL66899.1	RNA polymerase sigma-70 factor, ECF subfamily. (295 aa)
	SDL63286.1	dGTPase; Belongs to the dGTPase family. Type 2 subfamily. (414 aa)
	SDL63243.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (835 aa)
	SDL63146.1	Uncharacterized conserved protein, LabA/DUF88 family. (337 aa)
	SDL61666.1	Hypothetical protein. (93 aa)
	rpoB	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1144 aa)
	rpoC	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1295 aa)
	SDL58745.1	Hypothetical protein. (150 aa)
	SDL53587.1	Hypothetical protein. (168 aa)
	SDL53184.1	Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family. (123 aa)
	SDL52767.1	RNA polymerase sigma-70 factor, ECF subfamily. (310 aa)
	SDL52574.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	SDL52194.1	Hypothetical protein. (162 aa)
	rpoA	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (348 aa)
	SDL46204.1	RNA polymerase sigma-70 factor, ECF subfamily. (182 aa)
	SDL46087.1	RNA polymerase sigma factor, sigma-70 family. (432 aa)
	SDL46050.1	Uncharacterized conserved protein YdhG, YjbR/CyaY-like superfamily, DUF1801 family. (122 aa)
	SDL45970.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (412 aa)
	SDL45455.1	Protein of unknown function. (105 aa)
	SDL45057.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (221 aa)
	SDL45042.1	Histidine kinase-like ATPase domain-containing protein. (316 aa)
	rpmA	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. (89 aa)
	SDL40010.1	RNA polymerase sigma-70 factor, ECF subfamily. (185 aa)
	SDL39969.1	RNA polymerase sigma-70 factor, ECF subfamily. (179 aa)
	SDL37141.1	Putative regulatory protein, FmdB family. (104 aa)
	SDL36998.1	RNA polymerase sigma-70 factor, ECF subfamily. (210 aa)
	SDL35916.1	Hypothetical protein. (111 aa)
	SDL34276.1	RNA polymerase sigma-70 factor, ECF subfamily. (284 aa)
	SDL33341.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (408 aa)
	SDL31182.1	RNA polymerase sigma-70 factor, ECF subfamily. (305 aa)
	SDL24094.1	Uncharacterized conserved protein YdhG, YjbR/CyaY-like superfamily, DUF1801 family. (116 aa)
	SDL20546.1	RNA polymerase sigma-70 factor, ECF subfamily. (405 aa)
	SDL19776.1	Anti-sigma-K factor RskA. (241 aa)
	SDL19756.1	RNA polymerase sigma-70 factor, ECF subfamily. (186 aa)
	SDL17824.1	Anti-sigma regulatory factor (Ser/Thr protein kinase). (319 aa)
	SDL17804.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (266 aa)
	SDL17788.1	Anti-sigma regulatory factor (Ser/Thr protein kinase). (313 aa)
	SDL16240.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (300 aa)
	SDL10110.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (301 aa)
	SDL08032.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (322 aa)
	whiB-4	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (108 aa)
	SDL06964.1	Hypothetical protein. (315 aa)
	SDL03045.1	Protein of unknown function. (129 aa)
	SDL02962.1	Histidine kinase-like ATPase domain-containing protein. (173 aa)
	SDL01888.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
	SDL01513.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)
	SDK93109.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)
	SDK91948.1	Hypothetical protein. (86 aa)
	SDK91684.1	Peptide/nickel transport system permease protein. (337 aa)
	SDK91663.1	Peptide/nickel transport system ATP-binding protein. (293 aa)
	SDK91212.1	RNA polymerase sigma-70 factor, ECF subfamily. (280 aa)
	SDK90692.1	Response regulator of citrate/malate metabolism. (225 aa)
	SDK89443.1	RNHCP domain-containing protein. (138 aa)
	SDK88738.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (256 aa)
	SDK88628.1	RNA polymerase sigma-70 factor, ECF subfamily. (180 aa)
	SDK88616.1	Anti-sigma-K factor RskA. (249 aa)
	SDK86895.1	RNA polymerase sigma-70 factor, ECF subfamily. (289 aa)
	dnaE2	Error-prone DNA polymerase, DnaE-like; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1055 aa)
	SDK81244.1	RNA polymerase sigma-70 factor, ECF subfamily. (304 aa)
	SDK78794.1	Htaa protein. (447 aa)
	dnaG	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (621 aa)
	rnj	Ribonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (563 aa)
	SDK68007.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (259 aa)
	SDK67340.1	Hypothetical protein. (69 aa)
	SDK66816.1	Serine/threonine protein kinase. (541 aa)
	SDK64948.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (268 aa)
	SDK64477.1	Hypothetical protein. (129 aa)
	SDK61813.1	Protein of unknown function. (145 aa)
	SDK57122.1	RNA polymerase sigma-70 factor, ECF subfamily. (315 aa)
	SDK54589.1	RNA polymerase, sigma 37 subunit, RpsB/SigB; Belongs to the sigma-70 factor family. (267 aa)
	SDK54305.1	Protein of unknown function (DU1801). (157 aa)
	SDK53244.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
	SDK52596.1	Hypothetical protein. (234 aa)
	SDK52566.1	Hypothetical protein. (80 aa)
	SDK49799.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (110 aa)
	SDK49050.1	RNA polymerase, sigma subunit, RpoX/SigF; Belongs to the sigma-70 factor family. (272 aa)
	SDK48933.1	RNA polymerase sigma-70 factor, ECF subfamily. (205 aa)
	SDK48911.1	Anti-sigma-K factor rskA. (248 aa)
	SDL81481.1	DNA polymerase III, alpha subunit. (1180 aa)
	SDL78903.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (394 aa)

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK48911.1	SDK48933.1	SAMN05216298_0244	SAMN05216298_0245	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.983
SDK48911.1	SDK88628.1	SAMN05216298_0244	SAMN05216298_1843	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.970
SDK48911.1	SDK91948.1	SAMN05216298_0244	SAMN05216298_2034	Anti-sigma-K factor rskA.	Hypothetical protein.	0.882
SDK48911.1	SDL19756.1	SAMN05216298_0244	SAMN05216298_3009	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.970
SDK48911.1	SDL36998.1	SAMN05216298_0244	SAMN05216298_3650	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.460
SDK48911.1	SDL39969.1	SAMN05216298_0244	SAMN05216298_3816	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.470
SDK48911.1	SDL40010.1	SAMN05216298_0244	SAMN05216298_3818	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.467
SDK48911.1	SDL46204.1	SAMN05216298_0244	SAMN05216298_3922	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, ECF subfamily.	0.494
SDK48911.1	SDL63243.1	SAMN05216298_0244	SAMN05216298_4620	Anti-sigma-K factor rskA.	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.	0.480
SDK48911.1	SDL67020.1	SAMN05216298_0244	SAMN05216298_4726	Anti-sigma-K factor rskA.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.454
SDK48911.1	SDL68320.1	SAMN05216298_0244	SAMN05216298_4784	Anti-sigma-K factor rskA.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.447
SDK48933.1	SDK48911.1	SAMN05216298_0245	SAMN05216298_0244	RNA polymerase sigma-70 factor, ECF subfamily.	Anti-sigma-K factor rskA.	0.983
SDK48933.1	SDK53244.1	SAMN05216298_0245	SAMN05216298_0436	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.481
SDK48933.1	SDK88616.1	SAMN05216298_0245	SAMN05216298_1842	RNA polymerase sigma-70 factor, ECF subfamily.	Anti-sigma-K factor RskA.	0.971
SDK48933.1	SDL08032.1	SAMN05216298_0245	SAMN05216298_2624	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.485
SDK48933.1	SDL19776.1	SAMN05216298_0245	SAMN05216298_3010	RNA polymerase sigma-70 factor, ECF subfamily.	Anti-sigma-K factor RskA.	0.971
SDK48933.1	SDL34276.1	SAMN05216298_0245	SAMN05216298_3514	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.581
SDK48933.1	SDL35916.1	SAMN05216298_0245	SAMN05216298_3597	RNA polymerase sigma-70 factor, ECF subfamily.	Hypothetical protein.	0.437
SDK48933.1	SDL36998.1	SAMN05216298_0245	SAMN05216298_3650	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.571
SDK48933.1	SDL39969.1	SAMN05216298_0245	SAMN05216298_3816	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.590