38 items (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDL01513.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)
	SDL01888.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
	SDL08032.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (322 aa)
	SDL10110.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (301 aa)
	SDL16240.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (300 aa)
	SDL17804.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (266 aa)
	SDL19756.1	RNA polymerase sigma-70 factor, ECF subfamily. (186 aa)
	SDL31182.1	RNA polymerase sigma-70 factor, ECF subfamily. (305 aa)
	SDL34276.1	RNA polymerase sigma-70 factor, ECF subfamily. (284 aa)
	SDL36998.1	RNA polymerase sigma-70 factor, ECF subfamily. (210 aa)
	SDL39969.1	RNA polymerase sigma-70 factor, ECF subfamily. (179 aa)
	SDL40010.1	RNA polymerase sigma-70 factor, ECF subfamily. (185 aa)
	SDL45970.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (412 aa)
	SDL46087.1	RNA polymerase sigma factor, sigma-70 family. (432 aa)
	SDL46204.1	RNA polymerase sigma-70 factor, ECF subfamily. (182 aa)
	sigA	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (558 aa)
	SDL48713.1	RNA polymerase primary sigma factor/RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (322 aa)
	SDL52574.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	SDL52767.1	RNA polymerase sigma-70 factor, ECF subfamily. (310 aa)
	SDL59461.1	RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (316 aa)
	SDL63243.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (835 aa)
	SDL66899.1	RNA polymerase sigma-70 factor, ECF subfamily. (295 aa)
	SDL67020.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
	SDL74868.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (325 aa)
	SDL68320.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (247 aa)
	SDK48933.1	RNA polymerase sigma-70 factor, ECF subfamily. (205 aa)
	SDK49050.1	RNA polymerase, sigma subunit, RpoX/SigF; Belongs to the sigma-70 factor family. (272 aa)
	SDK53244.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
	SDK54589.1	RNA polymerase, sigma 37 subunit, RpsB/SigB; Belongs to the sigma-70 factor family. (267 aa)
	SDK57122.1	RNA polymerase sigma-70 factor, ECF subfamily. (315 aa)
	SDK64948.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (268 aa)
	SDK68007.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (259 aa)
	SDK81244.1	RNA polymerase sigma-70 factor, ECF subfamily. (304 aa)
	SDK86895.1	RNA polymerase sigma-70 factor, ECF subfamily. (289 aa)
	SDK88628.1	RNA polymerase sigma-70 factor, ECF subfamily. (180 aa)
	SDK88738.1	RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. (256 aa)
	SDK91212.1	RNA polymerase sigma-70 factor, ECF subfamily. (280 aa)
	SDK93109.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK48933.1	SDK53244.1	SAMN05216298_0245	SAMN05216298_0436	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.481
SDK48933.1	SDL08032.1	SAMN05216298_0245	SAMN05216298_2624	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.485
SDK48933.1	SDL34276.1	SAMN05216298_0245	SAMN05216298_3514	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.581
SDK48933.1	SDL36998.1	SAMN05216298_0245	SAMN05216298_3650	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.571
SDK48933.1	SDL39969.1	SAMN05216298_0245	SAMN05216298_3816	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.590
SDK48933.1	SDL40010.1	SAMN05216298_0245	SAMN05216298_3818	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.583
SDK48933.1	SDL46204.1	SAMN05216298_0245	SAMN05216298_3922	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.533
SDK48933.1	SDL52574.1	SAMN05216298_0245	SAMN05216298_4226	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.458
SDK48933.1	SDL67020.1	SAMN05216298_0245	SAMN05216298_4726	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.439
SDK48933.1	SDL68320.1	SAMN05216298_0245	SAMN05216298_4784	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.473
SDK53244.1	SDK48933.1	SAMN05216298_0436	SAMN05216298_0245	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.481
SDK53244.1	SDK68007.1	SAMN05216298_0436	SAMN05216298_1135	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.566
SDK53244.1	SDK88628.1	SAMN05216298_0436	SAMN05216298_1843	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.467
SDK53244.1	SDL19756.1	SAMN05216298_0436	SAMN05216298_3009	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.404
SDK53244.1	SDL34276.1	SAMN05216298_0436	SAMN05216298_3514	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.519
SDK53244.1	SDL68320.1	SAMN05216298_0436	SAMN05216298_4784	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.668
SDK68007.1	SDK53244.1	SAMN05216298_1135	SAMN05216298_0436	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.566
SDK68007.1	SDL19756.1	SAMN05216298_1135	SAMN05216298_3009	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.557
SDK68007.1	SDL36998.1	SAMN05216298_1135	SAMN05216298_3650	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.689
SDK68007.1	SDL39969.1	SAMN05216298_1135	SAMN05216298_3816	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.431