19 items (Glycomyces sambucus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDL34276.1	RNA polymerase sigma-70 factor, ECF subfamily. (284 aa)
	SDL36998.1	RNA polymerase sigma-70 factor, ECF subfamily. (210 aa)
	SDL39969.1	RNA polymerase sigma-70 factor, ECF subfamily. (179 aa)
	SDL40010.1	RNA polymerase sigma-70 factor, ECF subfamily. (185 aa)
	SDL46204.1	RNA polymerase sigma-70 factor, ECF subfamily. (182 aa)
	SDL52574.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	SDL63243.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (835 aa)
	SDL67020.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
	SDL74868.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (325 aa)
	SDL68320.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (247 aa)
	SDK48933.1	RNA polymerase sigma-70 factor, ECF subfamily. (205 aa)
	SDK53244.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)
	SDK68007.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (259 aa)
	SDK88628.1	RNA polymerase sigma-70 factor, ECF subfamily. (180 aa)
	SDK93109.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)
	SDL01513.1	RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)
	SDL01888.1	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
	SDL08032.1	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily. (322 aa)
	SDL19756.1	RNA polymerase sigma-70 factor, ECF subfamily. (186 aa)

Your Current Organism:

Glycomyces sambucus

NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK48933.1	SDK53244.1	SAMN05216298_0245	SAMN05216298_0436	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.481
SDK48933.1	SDL08032.1	SAMN05216298_0245	SAMN05216298_2624	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.485
SDK48933.1	SDL34276.1	SAMN05216298_0245	SAMN05216298_3514	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.581
SDK48933.1	SDL36998.1	SAMN05216298_0245	SAMN05216298_3650	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.571
SDK48933.1	SDL39969.1	SAMN05216298_0245	SAMN05216298_3816	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.590
SDK48933.1	SDL40010.1	SAMN05216298_0245	SAMN05216298_3818	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.583
SDK48933.1	SDL46204.1	SAMN05216298_0245	SAMN05216298_3922	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.533
SDK48933.1	SDL52574.1	SAMN05216298_0245	SAMN05216298_4226	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.458
SDK48933.1	SDL67020.1	SAMN05216298_0245	SAMN05216298_4726	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.439
SDK48933.1	SDL68320.1	SAMN05216298_0245	SAMN05216298_4784	RNA polymerase sigma-70 factor, ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.473
SDK53244.1	SDK48933.1	SAMN05216298_0436	SAMN05216298_0245	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.481
SDK53244.1	SDK68007.1	SAMN05216298_0436	SAMN05216298_1135	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.566
SDK53244.1	SDK88628.1	SAMN05216298_0436	SAMN05216298_1843	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.467
SDK53244.1	SDL19756.1	SAMN05216298_0436	SAMN05216298_3009	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.404
SDK53244.1	SDL34276.1	SAMN05216298_0436	SAMN05216298_3514	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.519
SDK53244.1	SDL68320.1	SAMN05216298_0436	SAMN05216298_4784	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	0.668
SDK68007.1	SDK53244.1	SAMN05216298_1135	SAMN05216298_0436	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.	0.566
SDK68007.1	SDL19756.1	SAMN05216298_1135	SAMN05216298_3009	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.557
SDK68007.1	SDL36998.1	SAMN05216298_1135	SAMN05216298_3650	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.689
SDK68007.1	SDL39969.1	SAMN05216298_1135	SAMN05216298_3816	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor, ECF subfamily.	0.431