(5 nodes) Reproduction network (Aspergillus niger)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3XLP1_ASPNA	Uncharacterized protein. (326 aa)
	G3XZP2_ASPNA	Uncharacterized protein. (356 aa)
	G3Y6H5_ASPNA	APH domain-containing protein. (365 aa)
	G3Y9S8_ASPNA	Mnd1 domain-containing protein. (223 aa)
	G3YC24_ASPNA	Uncharacterized protein. (161 aa)

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XLP1_ASPNA	G3Y9S8_ASPNA	G3XLP1	G3Y9S8	Uncharacterized protein.	Mnd1 domain-containing protein.	0.631
G3XLP1_ASPNA	G3YC24_ASPNA	G3XLP1	G3YC24	Uncharacterized protein.	Uncharacterized protein.	0.585
G3XZP2_ASPNA	G3YC24_ASPNA	G3XZP2	G3YC24	Uncharacterized protein.	Uncharacterized protein.	0.950
G3Y6H5_ASPNA	G3YC24_ASPNA	G3Y6H5	G3YC24	APH domain-containing protein.	Uncharacterized protein.	0.950
G3Y9S8_ASPNA	G3XLP1_ASPNA	G3Y9S8	G3XLP1	Mnd1 domain-containing protein.	Uncharacterized protein.	0.631
G3Y9S8_ASPNA	G3YC24_ASPNA	G3Y9S8	G3YC24	Mnd1 domain-containing protein.	Uncharacterized protein.	0.991
G3YC24_ASPNA	G3XLP1_ASPNA	G3YC24	G3XLP1	Uncharacterized protein.	Uncharacterized protein.	0.585
G3YC24_ASPNA	G3XZP2_ASPNA	G3YC24	G3XZP2	Uncharacterized protein.	Uncharacterized protein.	0.950
G3YC24_ASPNA	G3Y6H5_ASPNA	G3YC24	G3Y6H5	Uncharacterized protein.	APH domain-containing protein.	0.950
G3YC24_ASPNA	G3Y9S8_ASPNA	G3YC24	G3Y9S8	Uncharacterized protein.	Mnd1 domain-containing protein.	0.991