(27 nodes) Mixed, incl. Outer kinetochore, and Gamma-tubulin complex network (Aspergillus niger)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3XMJ3_ASPNA	Spindle pole body component. (951 aa)
	G3XN20_ASPNA	Uncharacterized protein. (1275 aa)
	G3XNP8_ASPNA	Uncharacterized protein. (110 aa)
	G3XP30_ASPNA	Uncharacterized protein. (541 aa)
	G3XRU1_ASPNA	Uncharacterized protein. (362 aa)
	G3XSP9_ASPNA	Uncharacterized protein. (194 aa)
	G3XSY5_ASPNA	Uncharacterized protein. (351 aa)
	G3XYJ0_ASPNA	Spindle pole body component. (797 aa)
	G3XZ20_ASPNA	Uncharacterized protein. (858 aa)
	G3XZ21_ASPNA	Uncharacterized protein. (170 aa)
	G3Y131_ASPNA	Spindle pole body component. (860 aa)
	G3Y205_ASPNA	C2H2-type domain-containing protein. (406 aa)
	G3Y206_ASPNA	Uncharacterized protein. (626 aa)
	G3Y2B8_ASPNA	Spindle pole body component. (890 aa)
	G3Y2R3_ASPNA	PPR_long domain-containing protein. (693 aa)
	G3Y3J1_ASPNA	Spindle pole body component. (980 aa)
	G3Y5M7_ASPNA	Uncharacterized protein. (310 aa)
	G3Y5V4_ASPNA	Peroxin/Ferlin domain-containing protein. (1346 aa)
	G3YA70_ASPNA	Uncharacterized protein. (842 aa)
	G3YAE6_ASPNA	Uncharacterized protein. (625 aa)
	G3YBT8_ASPNA	Uncharacterized protein. (240 aa)
	G3YDW4_ASPNA	Uncharacterized protein. (78 aa)
	G3YF85_ASPNA	Uncharacterized protein. (97 aa)
	G3YFI5_ASPNA	Uncharacterized protein. (625 aa)
	G3YFV1_ASPNA	Uncharacterized protein. (188 aa)
	G3YHC9_ASPNA	Uncharacterized protein. (412 aa)
	G3YHJ9_ASPNA	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (472 aa)

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XMJ3_ASPNA	G3XN20_ASPNA	G3XMJ3	G3XN20	Spindle pole body component.	Uncharacterized protein.	0.686
G3XMJ3_ASPNA	G3XP30_ASPNA	G3XMJ3	G3XP30	Spindle pole body component.	Uncharacterized protein.	0.686
G3XMJ3_ASPNA	G3XRU1_ASPNA	G3XMJ3	G3XRU1	Spindle pole body component.	Uncharacterized protein.	0.686
G3XMJ3_ASPNA	G3XSY5_ASPNA	G3XMJ3	G3XSY5	Spindle pole body component.	Uncharacterized protein.	0.407
G3XMJ3_ASPNA	G3XYJ0_ASPNA	G3XMJ3	G3XYJ0	Spindle pole body component.	Spindle pole body component.	0.993
G3XMJ3_ASPNA	G3XZ21_ASPNA	G3XMJ3	G3XZ21	Spindle pole body component.	Uncharacterized protein.	0.879
G3XMJ3_ASPNA	G3Y131_ASPNA	G3XMJ3	G3Y131	Spindle pole body component.	Spindle pole body component.	0.995
G3XMJ3_ASPNA	G3Y206_ASPNA	G3XMJ3	G3Y206	Spindle pole body component.	Uncharacterized protein.	0.686
G3XMJ3_ASPNA	G3Y2B8_ASPNA	G3XMJ3	G3Y2B8	Spindle pole body component.	Spindle pole body component.	0.991
G3XMJ3_ASPNA	G3Y2R3_ASPNA	G3XMJ3	G3Y2R3	Spindle pole body component.	PPR_long domain-containing protein.	0.686
G3XMJ3_ASPNA	G3Y3J1_ASPNA	G3XMJ3	G3Y3J1	Spindle pole body component.	Spindle pole body component.	0.993
G3XMJ3_ASPNA	G3Y5V4_ASPNA	G3XMJ3	G3Y5V4	Spindle pole body component.	Peroxin/Ferlin domain-containing protein.	0.704
G3XMJ3_ASPNA	G3YA70_ASPNA	G3XMJ3	G3YA70	Spindle pole body component.	Uncharacterized protein.	0.686
G3XMJ3_ASPNA	G3YDW4_ASPNA	G3XMJ3	G3YDW4	Spindle pole body component.	Uncharacterized protein.	0.861
G3XMJ3_ASPNA	G3YF85_ASPNA	G3XMJ3	G3YF85	Spindle pole body component.	Uncharacterized protein.	0.971
G3XMJ3_ASPNA	G3YFI5_ASPNA	G3XMJ3	G3YFI5	Spindle pole body component.	Uncharacterized protein.	0.686
G3XMJ3_ASPNA	G3YFV1_ASPNA	G3XMJ3	G3YFV1	Spindle pole body component.	Uncharacterized protein.	0.863
G3XMJ3_ASPNA	G3YHJ9_ASPNA	G3XMJ3	G3YHJ9	Spindle pole body component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.987
G3XN20_ASPNA	G3XMJ3_ASPNA	G3XN20	G3XMJ3	Uncharacterized protein.	Spindle pole body component.	0.686
G3XN20_ASPNA	G3XYJ0_ASPNA	G3XN20	G3XYJ0	Uncharacterized protein.	Spindle pole body component.	0.785