(20 nodes) Homologous chromosome segregation network (Aspergillus niger)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3YC24_ASPNA	Uncharacterized protein. (161 aa)
	G3XMY8_ASPNA	Uncharacterized protein. (568 aa)
	G3YBY0_ASPNA	Protein kinase domain-containing protein. (297 aa)
	G3XNE0_ASPNA	Csm1 domain-containing protein. (520 aa)
	G3XNT2_ASPNA	SUN domain-containing protein. (621 aa)
	G3XUJ5_ASPNA	Uncharacterized protein. (262 aa)
	G3XW63_ASPNA	Uncharacterized protein. (450 aa)
	G3XW64_ASPNA	Rad21_Rec8 domain-containing protein. (237 aa)
	G3XYY6_ASPNA	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (370 aa)
	G3YFM7_ASPNA	HORMA domain-containing protein. (730 aa)
	G3XZU8_ASPNA	Uncharacterized protein. (547 aa)
	G3Y1T8_ASPNA	Protein kinase domain-containing protein. (796 aa)
	G3Y2Q2_ASPNA	Uncharacterized protein. (301 aa)
	G3Y397_ASPNA	Uncharacterized protein. (731 aa)
	G3YBM4_ASPNA	Uncharacterized protein. (183 aa)
	G3YFM4_ASPNA	Uncharacterized protein. (1457 aa)
	G3XLT4_ASPNA	Uncharacterized protein. (223 aa)
	G3XLY5_ASPNA	Protein kinase domain-containing protein. (1141 aa)
	G3YE74_ASPNA	HTH APSES-type domain-containing protein. (427 aa)
	G3YC28_ASPNA	Protein kinase domain-containing protein. (491 aa)

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XLY5_ASPNA	G3XNT2_ASPNA	G3XLY5	G3XNT2	Protein kinase domain-containing protein.	SUN domain-containing protein.	0.774
G3XLY5_ASPNA	G3XW63_ASPNA	G3XLY5	G3XW63	Protein kinase domain-containing protein.	Uncharacterized protein.	0.927
G3XLY5_ASPNA	G3XW64_ASPNA	G3XLY5	G3XW64	Protein kinase domain-containing protein.	Rad21_Rec8 domain-containing protein.	0.927
G3XLY5_ASPNA	G3XYY6_ASPNA	G3XLY5	G3XYY6	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.817
G3XLY5_ASPNA	G3Y1T8_ASPNA	G3XLY5	G3Y1T8	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.457
G3XLY5_ASPNA	G3YBY0_ASPNA	G3XLY5	G3YBY0	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.792
G3XLY5_ASPNA	G3YC28_ASPNA	G3XLY5	G3YC28	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.710
G3XMY8_ASPNA	G3XNE0_ASPNA	G3XMY8	G3XNE0	Uncharacterized protein.	Csm1 domain-containing protein.	0.864
G3XMY8_ASPNA	G3XUJ5_ASPNA	G3XMY8	G3XUJ5	Uncharacterized protein.	Uncharacterized protein.	0.864
G3XNE0_ASPNA	G3XMY8_ASPNA	G3XNE0	G3XMY8	Csm1 domain-containing protein.	Uncharacterized protein.	0.864
G3XNE0_ASPNA	G3XYY6_ASPNA	G3XNE0	G3XYY6	Csm1 domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.465
G3XNE0_ASPNA	G3XZU8_ASPNA	G3XNE0	G3XZU8	Csm1 domain-containing protein.	Uncharacterized protein.	0.530
G3XNE0_ASPNA	G3YBY0_ASPNA	G3XNE0	G3YBY0	Csm1 domain-containing protein.	Protein kinase domain-containing protein.	0.465
G3XNT2_ASPNA	G3XLY5_ASPNA	G3XNT2	G3XLY5	SUN domain-containing protein.	Protein kinase domain-containing protein.	0.774
G3XNT2_ASPNA	G3YE74_ASPNA	G3XNT2	G3YE74	SUN domain-containing protein.	HTH APSES-type domain-containing protein.	0.855
G3XNT2_ASPNA	G3YFM7_ASPNA	G3XNT2	G3YFM7	SUN domain-containing protein.	HORMA domain-containing protein.	0.503
G3XUJ5_ASPNA	G3XMY8_ASPNA	G3XUJ5	G3XMY8	Uncharacterized protein.	Uncharacterized protein.	0.864
G3XUJ5_ASPNA	G3XYY6_ASPNA	G3XUJ5	G3XYY6	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.465
G3XUJ5_ASPNA	G3XZU8_ASPNA	G3XUJ5	G3XZU8	Uncharacterized protein.	Uncharacterized protein.	0.431
G3XUJ5_ASPNA	G3YBY0_ASPNA	G3XUJ5	G3YBY0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.465