(34 nodes) SWI/SNF superfamily-type complex network (Aspergillus niger)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3XN95_ASPNA	Uncharacterized protein; Belongs to the actin family. (468 aa)
	G3XNL9_ASPNA	Zn(2)-C6 fungal-type domain-containing protein. (822 aa)
	G3XPH3_ASPNA	Uncharacterized protein; Belongs to the actin family. (752 aa)
	G3XPH4_ASPNA	YL1_C domain-containing protein. (187 aa)
	G3XQR7_ASPNA	Uncharacterized protein; Belongs to the actin family. (668 aa)
	G3XQW3_ASPNA	Zn(2)-C6 fungal-type domain-containing protein. (823 aa)
	G3XSL2_ASPNA	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (469 aa)
	G3XTE4_ASPNA	Uncharacterized protein. (1112 aa)
	G3XUY8_ASPNA	Uncharacterized protein. (268 aa)
	G3XV11_ASPNA	Uncharacterized protein. (1588 aa)
	G3XYM5_ASPNA	Uncharacterized protein. (573 aa)
	G3Y0A7_ASPNA	Uncharacterized protein. (632 aa)
	G3Y276_ASPNA	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (719 aa)
	G3Y2C4_ASPNA	Fungal_trans domain-containing protein. (555 aa)
	G3Y2W2_ASPNA	YL1_C domain-containing protein. (785 aa)
	G3Y364_ASPNA	Uncharacterized protein; Belongs to the actin family. (472 aa)
	G3Y3J8_ASPNA	ARID domain-containing protein. (982 aa)
	G3Y4L5_ASPNA	Uncharacterized protein. (1412 aa)
	G3Y4M2_ASPNA	Uncharacterized protein. (1697 aa)
	G3Y542_ASPNA	Uncharacterized protein. (421 aa)
	h2AV	Histone H2A; Belongs to the histone H2A family. (138 aa)
	G3Y8L5_ASPNA	HSA-Myb protein. (1482 aa)
	G3Y923_ASPNA	Uncharacterized protein. (199 aa)
	G3Y9H0_ASPNA	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (458 aa)
	G3Y9R4_ASPNA	Uncharacterized protein. (254 aa)
	G3Y9W4_ASPNA	SNF5/SMARCB1/INI1 protein. (567 aa)
	G3YAE3_ASPNA	SNF5/SMARCB1/INI1 protein. (805 aa)
	G3YC26_ASPNA	Uncharacterized protein. (890 aa)
	G3YC49_ASPNA	Uncharacterized protein. (662 aa)
	G3YCE3_ASPNA	RFX-type winged-helix domain-containing protein. (738 aa)
	G3YCW2_ASPNA	HIT-type domain-containing protein. (269 aa)
	G3YDM6_ASPNA	Transcription initiation factor IIF, auxiliary subunit. (232 aa)
	G3YEC3_ASPNA	Uncharacterized protein. (574 aa)
	G3YGB3_ASPNA	Uncharacterized protein. (714 aa)

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XN95_ASPNA	G3XQR7_ASPNA	G3XN95	G3XQR7	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the actin family.	0.427
G3XN95_ASPNA	G3XSL2_ASPNA	G3XN95	G3XSL2	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.958
G3XN95_ASPNA	G3XV11_ASPNA	G3XN95	G3XV11	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.970
G3XN95_ASPNA	G3Y276_ASPNA	G3XN95	G3Y276	Uncharacterized protein; Belongs to the actin family.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.503
G3XN95_ASPNA	G3Y2W2_ASPNA	G3XN95	G3Y2W2	Uncharacterized protein; Belongs to the actin family.	YL1_C domain-containing protein.	0.919
G3XN95_ASPNA	G3Y364_ASPNA	G3XN95	G3Y364	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the actin family.	0.464
G3XN95_ASPNA	G3Y9H0_ASPNA	G3XN95	G3Y9H0	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.972
G3XN95_ASPNA	G3Y9R4_ASPNA	G3XN95	G3Y9R4	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.807
G3XN95_ASPNA	G3YCW2_ASPNA	G3XN95	G3YCW2	Uncharacterized protein; Belongs to the actin family.	HIT-type domain-containing protein.	0.978
G3XN95_ASPNA	G3YDM6_ASPNA	G3XN95	G3YDM6	Uncharacterized protein; Belongs to the actin family.	Transcription initiation factor IIF, auxiliary subunit.	0.512
G3XN95_ASPNA	h2AV	G3XN95	G3Y5A3	Uncharacterized protein; Belongs to the actin family.	Histone H2A; Belongs to the histone H2A family.	0.954
G3XNL9_ASPNA	G3XQR7_ASPNA	G3XNL9	G3XQR7	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.670
G3XNL9_ASPNA	G3Y0A7_ASPNA	G3XNL9	G3Y0A7	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.618
G3XNL9_ASPNA	G3Y4L5_ASPNA	G3XNL9	G3Y4L5	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.614
G3XNL9_ASPNA	G3YAE3_ASPNA	G3XNL9	G3YAE3	Zn(2)-C6 fungal-type domain-containing protein.	SNF5/SMARCB1/INI1 protein.	0.581
G3XNL9_ASPNA	G3YC26_ASPNA	G3XNL9	G3YC26	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.622
G3XNL9_ASPNA	G3YCE3_ASPNA	G3XNL9	G3YCE3	Zn(2)-C6 fungal-type domain-containing protein.	RFX-type winged-helix domain-containing protein.	0.718
G3XNL9_ASPNA	G3YEC3_ASPNA	G3XNL9	G3YEC3	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.524
G3XNL9_ASPNA	G3YGB3_ASPNA	G3XNL9	G3YGB3	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.524
G3XPH3_ASPNA	G3XPH4_ASPNA	G3XPH3	G3XPH4	Uncharacterized protein; Belongs to the actin family.	YL1_C domain-containing protein.	0.997