(11 nodes) Catalytic step 2 spliceosome network (Aspergillus niger)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3Y6Z6_ASPNA	Tr-type G domain-containing protein. (989 aa)
	G3YDQ1_ASPNA	TPR_REGION domain-containing protein. (850 aa)
	G3YG24_ASPNA	Uncharacterized protein. (677 aa)
	G3XLH6_ASPNA	WD_REPEATS_REGION domain-containing protein. (332 aa)
	G3XNU7_ASPNA	RRM domain-containing protein. (350 aa)
	G3XRN4_ASPNA	Uncharacterized protein. (284 aa)
	G3XSR8_ASPNA	Uncharacterized protein. (629 aa)
	G3XZ78_ASPNA	Uncharacterized protein. (538 aa)
	G3XZJ5_ASPNA	WD_REPEATS_REGION domain-containing protein. (579 aa)
	G3Y1Q2_ASPNA	RRM domain-containing protein. (152 aa)
	G3Y4H8_ASPNA	Uncharacterized protein. (408 aa)

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XLH6_ASPNA	G3XZJ5_ASPNA	G3XLH6	G3XZJ5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.694
G3XLH6_ASPNA	G3Y1Q2_ASPNA	G3XLH6	G3Y1Q2	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.468
G3XLH6_ASPNA	G3YDQ1_ASPNA	G3XLH6	G3YDQ1	WD_REPEATS_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.461
G3XLH6_ASPNA	G3YG24_ASPNA	G3XLH6	G3YG24	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.472
G3XNU7_ASPNA	G3XRN4_ASPNA	G3XNU7	G3XRN4	RRM domain-containing protein.	Uncharacterized protein.	0.613
G3XNU7_ASPNA	G3XSR8_ASPNA	G3XNU7	G3XSR8	RRM domain-containing protein.	Uncharacterized protein.	0.657
G3XNU7_ASPNA	G3XZJ5_ASPNA	G3XNU7	G3XZJ5	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.984
G3XNU7_ASPNA	G3Y1Q2_ASPNA	G3XNU7	G3Y1Q2	RRM domain-containing protein.	RRM domain-containing protein.	0.988
G3XNU7_ASPNA	G3Y4H8_ASPNA	G3XNU7	G3Y4H8	RRM domain-containing protein.	Uncharacterized protein.	0.984
G3XNU7_ASPNA	G3Y6Z6_ASPNA	G3XNU7	G3Y6Z6	RRM domain-containing protein.	Tr-type G domain-containing protein.	0.981
G3XNU7_ASPNA	G3YDQ1_ASPNA	G3XNU7	G3YDQ1	RRM domain-containing protein.	TPR_REGION domain-containing protein.	0.997
G3XNU7_ASPNA	G3YG24_ASPNA	G3XNU7	G3YG24	RRM domain-containing protein.	Uncharacterized protein.	0.997
G3XRN4_ASPNA	G3XNU7_ASPNA	G3XRN4	G3XNU7	Uncharacterized protein.	RRM domain-containing protein.	0.613
G3XRN4_ASPNA	G3XSR8_ASPNA	G3XRN4	G3XSR8	Uncharacterized protein.	Uncharacterized protein.	0.623
G3XRN4_ASPNA	G3XZJ5_ASPNA	G3XRN4	G3XZJ5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.777
G3XRN4_ASPNA	G3Y1Q2_ASPNA	G3XRN4	G3Y1Q2	Uncharacterized protein.	RRM domain-containing protein.	0.647
G3XRN4_ASPNA	G3Y6Z6_ASPNA	G3XRN4	G3Y6Z6	Uncharacterized protein.	Tr-type G domain-containing protein.	0.736
G3XRN4_ASPNA	G3YDQ1_ASPNA	G3XRN4	G3YDQ1	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.628
G3XRN4_ASPNA	G3YG24_ASPNA	G3XRN4	G3YG24	Uncharacterized protein.	Uncharacterized protein.	0.613
G3XSR8_ASPNA	G3XNU7_ASPNA	G3XSR8	G3XNU7	Uncharacterized protein.	RRM domain-containing protein.	0.657