(6 nodes) High mobility group box domain network (Aspergillus niger)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G3YG09_ASPNA	Uncharacterized protein. (377 aa)
	G3Y9F9_ASPNA	HMG box domain-containing protein. (695 aa)
	G3XT28_ASPNA	HMG box domain-containing protein. (460 aa)
	G3XT81_ASPNA	Uncharacterized protein. (1143 aa)
	G3Y5E8_ASPNA	HMG box domain-containing protein. (675 aa)
	G3Y3L4_ASPNA	HMG box domain-containing protein. (103 aa)

Your Current Organism:

Aspergillus niger

NCBI taxonomy Id: 380704
Other names: A. niger ATCC 1015, Aspergillus niger ATCC 1015

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3XT28_ASPNA	G3Y5E8_ASPNA	G3XT28	G3Y5E8	HMG box domain-containing protein.	HMG box domain-containing protein.	0.577
G3XT28_ASPNA	G3Y9F9_ASPNA	G3XT28	G3Y9F9	HMG box domain-containing protein.	HMG box domain-containing protein.	0.577
G3XT81_ASPNA	G3Y3L4_ASPNA	G3XT81	G3Y3L4	Uncharacterized protein.	HMG box domain-containing protein.	0.802
G3XT81_ASPNA	G3YG09_ASPNA	G3XT81	G3YG09	Uncharacterized protein.	Uncharacterized protein.	0.802
G3Y3L4_ASPNA	G3XT81_ASPNA	G3Y3L4	G3XT81	HMG box domain-containing protein.	Uncharacterized protein.	0.802
G3Y3L4_ASPNA	G3YG09_ASPNA	G3Y3L4	G3YG09	HMG box domain-containing protein.	Uncharacterized protein.	0.532
G3Y5E8_ASPNA	G3XT28_ASPNA	G3Y5E8	G3XT28	HMG box domain-containing protein.	HMG box domain-containing protein.	0.577
G3Y9F9_ASPNA	G3XT28_ASPNA	G3Y9F9	G3XT28	HMG box domain-containing protein.	HMG box domain-containing protein.	0.577
G3YG09_ASPNA	G3XT81_ASPNA	G3YG09	G3XT81	Uncharacterized protein.	Uncharacterized protein.	0.802
G3YG09_ASPNA	G3Y3L4_ASPNA	G3YG09	G3Y3L4	Uncharacterized protein.	HMG box domain-containing protein.	0.532