(88 nodes) Mixed, incl. Nucleotide-sugar metabolic process, and Carbohydrate biosynthetic process network (Mesorhizobium loti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OBQ74288.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	OBQ67527.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	OBQ67528.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	OBQ67529.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	OBQ67628.1	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (716 aa)
	OBQ67639.1	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	OBQ67640.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	OBQ67641.1	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	OBQ68203.1	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	OBQ68204.1	1,3-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	OBQ67650.1	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	OBQ67653.1	Phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	OBQ68206.1	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	OBQ67654.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	OBQ67655.1	Succinoglycan biosynthesis protein exoa; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	OBQ67656.1	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	OBQ67657.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	OBQ67658.1	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	OBQ67659.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	OBQ67948.1	UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (331 aa)
	OBQ68011.1	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	OBQ68012.1	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family. (471 aa)
	OBQ68039.1	Nodulation protein NodZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	OBQ68040.1	GDP-mannose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	OBQ68041.1	GDP-fucose synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	OBQ68042.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (84 aa)
	OBQ68092.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (122 aa)
	OBQ62489.1	Nodulation protein NolL; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	OBQ62628.1	UDP-N-acetyl-D-mannosaminuronic acid transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (259 aa)
	OBQ62630.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	OBQ62631.1	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology. (846 aa)
	OBQ61140.1	UDP-galactopyranose mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	OBQ61141.1	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	OBQ61142.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
	OBQ61423.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	OBQ61344.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	A8146_18710	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	OBQ60019.1	UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (343 aa)
	OBQ60023.1	N-acetylglucosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
	OBQ60024.1	Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 26 family. (307 aa)
	OBQ60188.1	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (745 aa)
	OBQ60210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (398 aa)
	OBQ60213.1	Ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	OBQ60214.1	Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	OBQ60215.1	Lipid carrier--UDP-N-acetylgalactosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	OBQ60216.1	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	OBQ60217.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
	OBQ60218.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	OBQ60219.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (335 aa)
	OBQ59390.1	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	OBQ57929.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	OBQ73591.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	OBQ73592.1	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
	OBQ73748.1	N-acetylglucosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
	OBQ73593.1	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (502 aa)
	OBQ73749.1	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	OBQ73594.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (137 aa)
	OBQ73640.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)
	OBQ73641.1	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	OBQ73427.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	OBQ71278.1	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa)
	OBQ71316.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (615 aa)
	OBQ71317.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
	OBQ71281.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	OBQ71282.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	OBQ71283.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	OBQ71284.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	OBQ71318.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	OBQ71285.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (453 aa)
	OBQ71286.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (325 aa)
	OBQ71287.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (309 aa)
	OBQ71288.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	OBQ71291.1	NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	OBQ71292.1	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	OBQ71293.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	OBQ71294.1	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	OBQ71295.1	Glucose-1-phosphate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	OBQ71296.1	GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	OBQ69501.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	OBQ69502.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	OBQ69577.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	gmd	GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (329 aa)
	OBQ69504.1	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family. (471 aa)
	OBQ69505.1	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	OBQ69506.1	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (295 aa)
	OBQ69507.1	dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (356 aa)
	OBQ69508.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
	OBQ69509.1	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (293 aa)

Your Current Organism:

Mesorhizobium loti

NCBI taxonomy Id: 381
Other names: ATCC 700743, CCUG 27878, DSM 2626, IFO 14779, JCM 21464, LMG 6125, LMG:6125, M. loti, Mesorhizobium sp. LMG 6125, NBRC 14779, NZP 2213, Rhizobium loti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A8146_18710	OBQ60019.1	A8146_18710	A8146_18715	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.814
A8146_18710	OBQ60023.1	A8146_18710	A8146_18740	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylglucosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
A8146_18710	OBQ67529.1	A8146_18710	A8146_08605	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
A8146_18710	OBQ67628.1	A8146_18710	A8146_09190	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
A8146_18710	OBQ67650.1	A8146_18710	A8146_09310	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
A8146_18710	OBQ73593.1	A8146_18710	A8146_23520	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.752
A8146_18710	OBQ73748.1	A8146_18710	A8146_23515	Alkylhydroperoxidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylglucosaminyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
OBQ57929.1	OBQ67529.1	A8146_23105	A8146_08605	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
OBQ57929.1	OBQ67628.1	A8146_23105	A8146_09190	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
OBQ57929.1	OBQ67641.1	A8146_23105	A8146_09255	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
OBQ57929.1	OBQ68203.1	A8146_23105	A8146_09295	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
OBQ57929.1	OBQ68206.1	A8146_23105	A8146_09335	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
OBQ57929.1	OBQ71288.1	A8146_23105	A8146_25870	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
OBQ57929.1	OBQ71317.1	A8146_23105	A8146_25820	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
OBQ59390.1	OBQ60019.1	A8146_21150	A8146_18715	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 4-epimerase GalE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.453
OBQ59390.1	OBQ62631.1	A8146_21150	A8146_16035	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
OBQ59390.1	OBQ67628.1	A8146_21150	A8146_09190	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
OBQ59390.1	OBQ67650.1	A8146_21150	A8146_09310	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 6-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OBQ59390.1	OBQ67658.1	A8146_21150	A8146_09360	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
OBQ59390.1	OBQ67659.1	A8146_21150	A8146_09365	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400

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