STRINGSTRING
cybB cybB tdh tdh rspA rspA mtlD mtlD menC menC h16_A2131 h16_A2131 h16_A3010 h16_A3010 gntP gntP gnl1 gnl1 h16_B0127 h16_B0127 h16_B0130 h16_B0130 h16_B0131 h16_B0131 h16_B0212 h16_B0212 dapA2 dapA2 h16_B0217 h16_B0217 h16_B0321 h16_B0321 h16_B0322 h16_B0322 h16_B0323 h16_B0323 h16_B0324 h16_B0324 gnl2 gnl2 h16_B0965 h16_B0965 h16_B1075 h16_B1075 h16_B1217 h16_B1217 h16_B1218 h16_B1218 h16_B1219 h16_B1219 gnl3 gnl3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cybBCytochrome b561; 4 TMHs. (190 aa)
tdhThreonine dehydrogenase (Zn dependent). (344 aa)
rspAL-Alanine-DL-glutamate epimerase, muconate lactonizing enzyme. (402 aa)
mtlDMannitol dehydrogenase. (498 aa)
menCL-Alanine-DL-glutamate epimerase. (367 aa)
h16_A2131Probable extra-cytoplasmic solute receptor. (328 aa)
h16_A3010Cytochrome b561 / ferric reductase transmembranedomain; 5 TMHs. (286 aa)
gntPGluconate permease; 12 TMHs. (457 aa)
gnl1Gluconolactonase. (302 aa)
h16_B0127Glucarate dehydratase. (451 aa)
h16_B01302,5-dioxovalerate dehydrogenase/2-oxoglutarate semialdehyde dehydrogenase. (508 aa)
h16_B01315-Dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (304 aa)
h16_B0212NAD-dependent aldehyde dehydrogenase. (527 aa)
dapA2Dihydrodipicolinate synthase; Belongs to the DapA family. (310 aa)
h16_B0217L-Alanine-DL-glutamate epimerase or related enzyme of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (391 aa)
h16_B0321Altronate dehydratase. (518 aa)
h16_B0322Aldehyde dehydrogenase, NAD-dependent. (534 aa)
h16_B0323MFS transporter, ACS family; 12 TMHs. (443 aa)
h16_B0324Fumarylacetoacetate hydrolase. (399 aa)
gnl2Gluconolactonase. (307 aa)
h16_B0965Probable D-galactarate dehydratase. (521 aa)
h16_B10753-Oxoacyl-[acyl-carrier-protein] reductase. (256 aa)
h16_B1217Hypothetical protein. (314 aa)
h16_B121812 TMHs; MFS transporter, ACS family. (445 aa)
h16_B1219Metal-dependent amidohydrolase. (316 aa)
gnl3Gluconolactonase. (319 aa)
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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