Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cheB1 | fliM | H16_B0243 | H16_B0566 | Chemotaxis specific response regulator containing a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Flagellar motor switch protein. | 0.831 |
| cheB2 | fliM | H16_B2049 | H16_B0566 | Chemotaxis response regulator containing a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | Flagellar motor switch protein. | 0.780 |
| fliM | cheB1 | H16_B0566 | H16_B0243 | Flagellar motor switch protein. | Chemotaxis specific response regulator containing a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.831 |
| fliM | cheB2 | H16_B0566 | H16_B2049 | Flagellar motor switch protein. | Chemotaxis response regulator containing a methylesterase domain; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.780 |
| fliM | ntrC | H16_B0566 | H16_A2332 | Flagellar motor switch protein. | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.531 |
| ntrC | fliM | H16_A2332 | H16_B0566 | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Flagellar motor switch protein. | 0.531 |
| ntrC | phoB | H16_A2332 | H16_A2439 | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family; REC (residues 5 to 119, 2e-26) with a typical phosphorylation pocket (1/2 DD,D54,S/T82,K105). | 0.500 |
| ntrC | phoR | H16_A2332 | H16_A2438 | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | 0.493 |
| ntrC | wzc | H16_A2332 | H16_B0022 | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Protein tyrosin kinase involved in exopolysaccharide biosynthesis. | 0.426 |
| phoB | ntrC | H16_A2439 | H16_A2332 | Response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family; REC (residues 5 to 119, 2e-26) with a typical phosphorylation pocket (1/2 DD,D54,S/T82,K105). | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.500 |
| phoB | phoR | H16_A2439 | H16_A2438 | Response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family; REC (residues 5 to 119, 2e-26) with a typical phosphorylation pocket (1/2 DD,D54,S/T82,K105). | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | 0.998 |
| phoR | ntrC | H16_A2438 | H16_A2332 | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | Response regulator, nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.493 |
| phoR | phoB | H16_A2438 | H16_A2439 | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | Response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family; REC (residues 5 to 119, 2e-26) with a typical phosphorylation pocket (1/2 DD,D54,S/T82,K105). | 0.998 |
| phoR | prkA | H16_A2438 | H16_B0700 | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | Serine protein kinase; Deleted EC_number 2.7.1.37. | 0.426 |
| phoR | wzc | H16_A2438 | H16_B0022 | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | Protein tyrosin kinase involved in exopolysaccharide biosynthesis. | 0.450 |
| prkA | phoR | H16_B0700 | H16_A2438 | Serine protein kinase; Deleted EC_number 2.7.1.37. | Signal transduction histidine kinase, phosphate regulon sensor PhoR. | 0.426 |
| prkA | wzb | H16_B0700 | H16_B0023 | Serine protein kinase; Deleted EC_number 2.7.1.37. | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.602 |
| prkA | wzc | H16_B0700 | H16_B0022 | Serine protein kinase; Deleted EC_number 2.7.1.37. | Protein tyrosin kinase involved in exopolysaccharide biosynthesis. | 0.600 |
| wzb | prkA | H16_B0023 | H16_B0700 | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Serine protein kinase; Deleted EC_number 2.7.1.37. | 0.602 |
| wzb | wzc | H16_B0023 | H16_B0022 | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Protein tyrosin kinase involved in exopolysaccharide biosynthesis. | 0.988 |
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