STRINGSTRING
Fnod_0890 Fnod_0890 Fnod_0040 Fnod_0040 Fnod_1785 Fnod_1785
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Fnod_0890Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tpt:Tpet_0327 peptidoglycan glycosyltransferase. (547 aa)
Fnod_0040PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0041 glycosyl transferase, family 51. (686 aa)
Fnod_1785PFAM: penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0057 peptidoglycan glycosyltransferase. (586 aa)
Your Current Organism:
Fervidobacterium nodosum
NCBI taxonomy Id: 381764
Other names: F. nodosum Rt17-B1, Fervidobacterium nodosum Rt17-B1, Fervidobacterium nodosum str. Rt17-B1, Fervidobacterium nodosum strain Rt17-B1
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