(5 nodes) Mixed, incl. Nickel cation transport, and Oligopeptide transport permease C-like, N-terminal domain network (Sinorhizobium meliloti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIM00357.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AIM00358.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AIM00359.1	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AIM00360.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AIM00361.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)

Your Current Organism:

Sinorhizobium meliloti

NCBI taxonomy Id: 382
Other names: ATCC 9930, CCUG 27879, CFBP 5561, DSM 30135, Ensifer meliloti, Ensifer sp. AC50a, Ensifer sp. AC50e, HAMBI 2148, IAM 12611, ICMP 12623, IFO 14782, JCM 20682, LMG 6133, LMG:6133, NBRC 14782, NCAIM B.01520, NRRL L-45, NZP 4027, Rhizobium meliloti, Rhizobium meliloti (megaplasmid pRME41B SYM), Rhizobium meliloti (plasmid pRmeGR4b), Rhizobium meliloti plasmid pRmeGR4b, Rhizobium sp. AC50e, S. meliloti

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIM00357.1	AIM00358.1	DU99_13430	DU99_13435	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AIM00357.1	AIM00359.1	DU99_13430	DU99_13440	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIM00357.1	AIM00360.1	DU99_13430	DU99_13445	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AIM00357.1	AIM00361.1	DU99_13430	DU99_13450	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AIM00358.1	AIM00357.1	DU99_13435	DU99_13430	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AIM00358.1	AIM00359.1	DU99_13435	DU99_13440	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIM00358.1	AIM00360.1	DU99_13435	DU99_13445	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIM00358.1	AIM00361.1	DU99_13435	DU99_13450	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AIM00359.1	AIM00357.1	DU99_13440	DU99_13430	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIM00359.1	AIM00358.1	DU99_13440	DU99_13435	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIM00359.1	AIM00360.1	DU99_13440	DU99_13445	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AIM00359.1	AIM00361.1	DU99_13440	DU99_13450	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AIM00360.1	AIM00357.1	DU99_13445	DU99_13430	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AIM00360.1	AIM00358.1	DU99_13445	DU99_13435	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AIM00360.1	AIM00359.1	DU99_13445	DU99_13440	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AIM00360.1	AIM00361.1	DU99_13445	DU99_13450	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AIM00361.1	AIM00357.1	DU99_13450	DU99_13430	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AIM00361.1	AIM00358.1	DU99_13450	DU99_13435	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AIM00361.1	AIM00359.1	DU99_13450	DU99_13440	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
AIM00361.1	AIM00360.1	DU99_13450	DU99_13445	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947

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