(19 nodes) Mixed, incl. Substrate binding domain of ABC-type glycine betaine transport system, and Amine transmembrane transporter activity network (Sinorhizobium meliloti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	betA	Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (549 aa)
	betB	Betaine-aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. (487 aa)
	betC	Choline-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	betI	Transcriptional regulator; Repressor involved in choline regulation of the bet genes. (203 aa)
	AIL98859.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AIL98860.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AIL99833.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AIL99834.1	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AIM00007.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (33 aa)
	AIM00008.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	AIM00009.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	AIM00010.1	Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AIM00012.1	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)
	AIM00346.1	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	choW	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	proV	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	AIM00649.1	Histidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	AIM00650.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AIM00918.1	Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)

Your Current Organism:

Sinorhizobium meliloti

NCBI taxonomy Id: 382
Other names: ATCC 9930, CCUG 27879, CFBP 5561, DSM 30135, Ensifer meliloti, Ensifer sp. AC50a, Ensifer sp. AC50e, HAMBI 2148, IAM 12611, ICMP 12623, IFO 14782, JCM 20682, LMG 6133, LMG:6133, NBRC 14782, NCAIM B.01520, NRRL L-45, NZP 4027, Rhizobium meliloti, Rhizobium meliloti (megaplasmid pRME41B SYM), Rhizobium meliloti (plasmid pRmeGR4b), Rhizobium meliloti plasmid pRmeGR4b, Rhizobium sp. AC50e, S. meliloti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL98859.1	AIL98860.1	DU99_05360	DU99_05365	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIL98859.1	AIL99834.1	DU99_05360	DU99_10680	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AIL98859.1	AIM00010.1	DU99_05360	DU99_11630	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AIL98859.1	AIM00649.1	DU99_05360	DU99_14960	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
AIL98859.1	AIM00650.1	DU99_05360	DU99_14965	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIL98859.1	choW	DU99_05360	DU99_13380	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AIL98859.1	proV	DU99_05360	DU99_13385	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AIL98860.1	AIL98859.1	DU99_05365	DU99_05360	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIL98860.1	AIL99833.1	DU99_05365	DU99_10675	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIL98860.1	AIL99834.1	DU99_05365	DU99_10680	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIL98860.1	AIM00010.1	DU99_05365	DU99_11630	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AIL98860.1	AIM00346.1	DU99_05365	DU99_13375	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIL98860.1	AIM00649.1	DU99_05365	DU99_14960	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AIL98860.1	AIM00650.1	DU99_05365	DU99_14965	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AIL98860.1	choW	DU99_05365	DU99_13380	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AIL98860.1	proV	DU99_05365	DU99_13385	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIL99833.1	AIL98860.1	DU99_10675	DU99_05365	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIL99833.1	AIL99834.1	DU99_10675	DU99_10680	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine/betaine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AIL99833.1	AIM00010.1	DU99_10675	DU99_11630	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
AIL99833.1	AIM00650.1	DU99_10675	DU99_14965	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990

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