(70 nodes) Binding-protein-dependent transport system inner membrane component network (Sinorhizobium meliloti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIL99997.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
	AIM00168.1	Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AIM00169.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AIM00188.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AIM00189.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AIM00195.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AIM00196.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AIM00205.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	AIM00206.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AIL98522.1	Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	AIL98541.1	Putrescine/spermidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AIL98542.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AIM00957.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AIM00216.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AIM00217.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	choW	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AIM00359.1	D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AIM00360.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	AIM00391.1	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AIM00392.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AIM00406.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AIM00956.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AIM00764.1	Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AIM00833.1	DL-methionine transporter permease subunit; Part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	AIM00407.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AIM00445.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	AIM00446.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AIM00461.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AIM00462.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AIM00489.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AIM00490.1	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AIL99821.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	AIL98545.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	AIL98557.1	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AIL98558.1	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AIL98860.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AIL99301.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	AIM00870.1	Molybdate ABC transporter permease; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (230 aa)
	AIM00901.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AIL99739.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AIM00906.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AIL99740.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AIL99820.1	Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AIL97962.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AIL99302.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AIL97963.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AIL98000.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	AIL99796.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AIL99795.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AIM00543.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AIM00650.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AIM00907.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AIM00763.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AIM00521.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AIM00542.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AIM01175.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AIM01174.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AIM01153.1	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	thiP	Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	AIM01127.1	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AIM01001.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AIM01000.1	Thiamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	yejB	Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AIL98039.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AIL98040.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	pstC	ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (494 aa)
	pstA	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AIL98407.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AIL98408.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AIL98521.1	Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)

Your Current Organism:

Sinorhizobium meliloti

NCBI taxonomy Id: 382
Other names: ATCC 9930, CCUG 27879, CFBP 5561, DSM 30135, Ensifer meliloti, Ensifer sp. AC50a, Ensifer sp. AC50e, HAMBI 2148, IAM 12611, ICMP 12623, IFO 14782, JCM 20682, LMG 6133, LMG:6133, NBRC 14782, NCAIM B.01520, NRRL L-45, NZP 4027, Rhizobium meliloti, Rhizobium meliloti (megaplasmid pRME41B SYM), Rhizobium meliloti (plasmid pRmeGR4b), Rhizobium meliloti plasmid pRmeGR4b, Rhizobium sp. AC50e, S. meliloti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL97962.1	AIL97963.1	DU99_00615	DU99_00620	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AIL97962.1	AIL98040.1	DU99_00615	DU99_01010	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AIL97962.1	AIL98521.1	DU99_00615	DU99_03560	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AIL97962.1	AIL99796.1	DU99_00615	DU99_10475	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AIL97962.1	AIM00189.1	DU99_00615	DU99_12550	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
AIL97962.1	AIM00392.1	DU99_00615	DU99_13620	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
AIL97962.1	AIM00461.1	DU99_00615	DU99_13965	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AIL97962.1	AIM00956.1	DU99_00615	DU99_16640	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
AIL97962.1	AIM01001.1	DU99_00615	DU99_16865	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AIL97962.1	AIM01175.1	DU99_00615	DU99_17775	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
AIL97963.1	AIL97962.1	DU99_00620	DU99_00615	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AIL97963.1	AIL98039.1	DU99_00620	DU99_01005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
AIL97963.1	AIL98522.1	DU99_00620	DU99_03565	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
AIL97963.1	AIL99795.1	DU99_00620	DU99_10470	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AIL97963.1	AIM00188.1	DU99_00620	DU99_12545	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AIL97963.1	AIM00391.1	DU99_00620	DU99_13615	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
AIL97963.1	AIM00462.1	DU99_00620	DU99_13970	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AIL97963.1	AIM00957.1	DU99_00620	DU99_16645	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
AIL97963.1	AIM01000.1	DU99_00620	DU99_16860	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AIL97963.1	AIM01174.1	DU99_00620	DU99_17770	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560

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