STRINGSTRING
AIM00385.1 AIM00385.1 AIM00436.1 AIM00436.1 AIM00600.1 AIM00600.1 ctrA ctrA AIM00667.1 AIM00667.1 AIL97889.1 AIL97889.1 AIL97912.1 AIL97912.1 AIL98246.1 AIL98246.1 phoB phoB AIL98397.1 AIL98397.1 AIL98398.1 AIL98398.1 cheY1 cheY1 AIM00741.1 AIM00741.1 AIM00771.1 AIM00771.1 AIM01082.1 AIM01082.1 AIL98562.1 AIL98562.1 AIL98642.1 AIL98642.1 AIL98841.1 AIL98841.1 AIL98849.1 AIL98849.1 AIL99116.1 AIL99116.1 pleD pleD ntrC ntrC AIL99285.1 AIL99285.1 AIL99673.1 AIL99673.1 AIL99868.1 AIL99868.1 AIM00287.1 AIM00287.1 cheB cheB cheY2 cheY2 AIL98503.1 AIL98503.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AIM00385.1Two-component response regulator; In Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
AIM00436.1Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
AIM00600.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
ctrAChemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
AIM00667.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
AIL97889.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
AIL97912.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
AIL98246.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)
phoBChemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
AIL98397.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
AIL98398.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1168 aa)
cheY1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
AIM00741.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
AIM00771.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
AIM01082.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
AIL98562.1Two-component response regulator; In Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
AIL98642.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa)
AIL98841.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
AIL98849.1PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
AIL99116.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
pleDResponse regulator PleD; Involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
ntrCChemotaxis protein CheY; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (484 aa)
AIL99285.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
AIL99673.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (869 aa)
AIL99868.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
AIM00287.1Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
cheBChemotaxis protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
cheY2Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
AIL98503.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
Your Current Organism:
Sinorhizobium meliloti
NCBI taxonomy Id: 382
Other names: ATCC 9930, CCUG 27879, CFBP 5561, DSM 30135, Ensifer meliloti, Ensifer sp. AC50a, Ensifer sp. AC50e, HAMBI 2148, IAM 12611, ICMP 12623, IFO 14782, JCM 20682, LMG 6133, LMG:6133, NBRC 14782, NCAIM B.01520, NRRL L-45, NZP 4027, Rhizobium meliloti, Rhizobium meliloti (megaplasmid pRME41B SYM), Rhizobium meliloti (plasmid pRmeGR4b), Rhizobium meliloti plasmid pRmeGR4b, Rhizobium sp. AC50e, S. meliloti
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