(38 nodes) Clathrin-coated vesicle membrane network (Cajanus cajan)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KK1_032710	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1674 aa)
	KK1_031930	AP-2 complex subunit alpha; Subunit of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. (1020 aa)
	KK1_030801	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1697 aa)
	KK1_030544	Vacuolar-sorting receptor 1. (628 aa)
	KK1_013953	Epsin-3. (325 aa)
	KK1_002743	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1701 aa)
	KK1_024784	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (336 aa)
	KK1_024733	Uncharacterized protein. (108 aa)
	KK1_024675	Adaptin ear-binding coat-associated protein 1. (288 aa)
	KK1_025384	AP-1 complex subunit beta-1. (844 aa)
	KK1_029519	AP-1 complex subunit gamma-1. (555 aa)
	KK1_029521	AP-1 complex subunit gamma. (334 aa)
	KK1_020919	Vacuolar-sorting receptor 1. (622 aa)
	KK1_008249	Epsin-2. (777 aa)
	KK1_008006	Vacuolar-sorting receptor 1. (646 aa)
	KK1_007099	Serine/threonine-protein kinase CTR1. (838 aa)
	KK1_006830	Uncharacterized protein At1g03900 family. (281 aa)
	KK1_005805	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (168 aa)
	KK1_005682	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1707 aa)
	KK1_022088	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. (818 aa)
	KK1_021805	Epsin-2. (331 aa)
	KK1_021673	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. (934 aa)
	KK1_012465	AP-1 complex subunit gamma. (871 aa)
	KK1_012412	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (428 aa)
	KK1_011418	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. (845 aa)
	KK1_019681	Epsin-2. (931 aa)
	KK1_019591	Epsin-3. (272 aa)
	KK1_017509	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (314 aa)
	KK1_023453	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (207 aa)
	KK1_023033	Uncharacterized protein. (416 aa)
	KK1_014031	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. (820 aa)
	KK1_030189	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (160 aa)
	KK1_045555	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	KK1_044083	AP-1 complex subunit mu-1-I; Belongs to the adaptor complexes medium subunit family. (428 aa)
	KK1_042660	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (192 aa)
	KK1_041909	Extracellular ribonuclease. (386 aa)
	KK1_040713	Epsin-2. (291 aa)
	KK1_033771	Vacuolar-sorting receptor 2. (622 aa)

Your Current Organism:

Cajanus cajan

NCBI taxonomy Id: 3821
Other names: C. cajan, Cajanus cajan (L.) Millsp., pigeon pea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KK1_002743	KK1_005805	A0A151SP40	A0A151U1Q2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.717
KK1_002743	KK1_006830	A0A151SP40	A0A151U4B0	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein At1g03900 family.	0.653
KK1_002743	KK1_008249	A0A151SP40	A0A151U890	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Epsin-2.	0.830
KK1_002743	KK1_011418	A0A151SP40	A0A151TDQ2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.925
KK1_002743	KK1_012412	A0A151SP40	A0A151TGG6	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.681
KK1_002743	KK1_012465	A0A151SP40	A0A151TGJ8	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma.	0.831
KK1_002743	KK1_013953	A0A151SP40	A0A151SUR4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Epsin-3.	0.830
KK1_002743	KK1_017509	A0A151SP40	A0A151T7B0	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.722
KK1_002743	KK1_019591	A0A151SP40	A0A151TD61	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Epsin-3.	0.827
KK1_002743	KK1_019681	A0A151SP40	A0A151TDG7	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Epsin-2.	0.813
KK1_002743	KK1_021673	A0A151SP40	A0A151TM29	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Beta-adaptin-like protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.925
KK1_002743	KK1_021805	A0A151SP40	A0A151TMB4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Epsin-2.	0.864
KK1_002743	KK1_023033	A0A151SP40	A0A151T0P8	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.830
KK1_002743	KK1_023453	A0A151SP40	A0A151T1Y3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.722
KK1_002743	KK1_024675	A0A151SP40	A0A151SEN7	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Adaptin ear-binding coat-associated protein 1.	0.653
KK1_002743	KK1_024733	A0A151SP40	A0A151SEY1	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.655
KK1_002743	KK1_024784	A0A151SP40	A0A151SEZ5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.655
KK1_002743	KK1_025384	A0A151SP40	A0A151SCZ4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit beta-1.	0.925
KK1_002743	KK1_029519	A0A151SP40	A0A151S1W6	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma-1.	0.746
KK1_002743	KK1_029521	A0A151SP40	A0A151S1W2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-1 complex subunit gamma.	0.746