5 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101509802	High mobility group B protein 1. (173 aa)
	LOC101514351	Agamous-like MADS-box protein AGL62. (234 aa)
	LOC101499299	Lysine-specific demethylase JMJ30. (417 aa)
	LOC101514018	Agamous-like MADS-box protein AGL62. (231 aa)
	LOC101503313	LOW QUALITY PROTEIN: osmotin-like protein. (258 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101499299	LOC101503313	A0A1S2YMT1	A0A1S3ECR9	Lysine-specific demethylase JMJ30.	LOW QUALITY PROTEIN: osmotin-like protein.	0.428
LOC101499299	LOC101509802	A0A1S2YMT1	A0A1S2XPA0	Lysine-specific demethylase JMJ30.	High mobility group B protein 1.	0.604
LOC101499299	LOC101514018	A0A1S2YMT1	A0A1S3E312	Lysine-specific demethylase JMJ30.	Agamous-like MADS-box protein AGL62.	0.540
LOC101499299	LOC101514351	A0A1S2YMT1	A0A1S2XZ58	Lysine-specific demethylase JMJ30.	Agamous-like MADS-box protein AGL62.	0.540
LOC101503313	LOC101499299	A0A1S3ECR9	A0A1S2YMT1	LOW QUALITY PROTEIN: osmotin-like protein.	Lysine-specific demethylase JMJ30.	0.428
LOC101503313	LOC101509802	A0A1S3ECR9	A0A1S2XPA0	LOW QUALITY PROTEIN: osmotin-like protein.	High mobility group B protein 1.	0.442
LOC101503313	LOC101514018	A0A1S3ECR9	A0A1S3E312	LOW QUALITY PROTEIN: osmotin-like protein.	Agamous-like MADS-box protein AGL62.	0.614
LOC101503313	LOC101514351	A0A1S3ECR9	A0A1S2XZ58	LOW QUALITY PROTEIN: osmotin-like protein.	Agamous-like MADS-box protein AGL62.	0.614
LOC101509802	LOC101499299	A0A1S2XPA0	A0A1S2YMT1	High mobility group B protein 1.	Lysine-specific demethylase JMJ30.	0.604
LOC101509802	LOC101503313	A0A1S2XPA0	A0A1S3ECR9	High mobility group B protein 1.	LOW QUALITY PROTEIN: osmotin-like protein.	0.442
LOC101509802	LOC101514018	A0A1S2XPA0	A0A1S3E312	High mobility group B protein 1.	Agamous-like MADS-box protein AGL62.	0.540
LOC101509802	LOC101514351	A0A1S2XPA0	A0A1S2XZ58	High mobility group B protein 1.	Agamous-like MADS-box protein AGL62.	0.540
LOC101514018	LOC101499299	A0A1S3E312	A0A1S2YMT1	Agamous-like MADS-box protein AGL62.	Lysine-specific demethylase JMJ30.	0.540
LOC101514018	LOC101503313	A0A1S3E312	A0A1S3ECR9	Agamous-like MADS-box protein AGL62.	LOW QUALITY PROTEIN: osmotin-like protein.	0.614
LOC101514018	LOC101509802	A0A1S3E312	A0A1S2XPA0	Agamous-like MADS-box protein AGL62.	High mobility group B protein 1.	0.540
LOC101514351	LOC101499299	A0A1S2XZ58	A0A1S2YMT1	Agamous-like MADS-box protein AGL62.	Lysine-specific demethylase JMJ30.	0.540
LOC101514351	LOC101503313	A0A1S2XZ58	A0A1S3ECR9	Agamous-like MADS-box protein AGL62.	LOW QUALITY PROTEIN: osmotin-like protein.	0.614
LOC101514351	LOC101509802	A0A1S2XZ58	A0A1S2XPA0	Agamous-like MADS-box protein AGL62.	High mobility group B protein 1.	0.540