40 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101502781	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like. (183 aa)
	LOC101497242	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like. (189 aa)
	NAC14	NAC domain-containing protein 87. (365 aa)
	LOC101503350	Methyltransferase. (651 aa)
	LOC101506156	OBERON-like protein; Probable transcription factor. (565 aa)
	LOC101513114	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6-like. (223 aa)
	LOC101502625	F-box protein At2g26850-like. (391 aa)
	LOC101498381	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like. (235 aa)
	LOC101506306	Methyltransferase. (624 aa)
	LOC101489090	Auxin response factor 5-like. (159 aa)
	LOC101497300	F-box protein At2g26850-like. (337 aa)
	LOC101491769	Methyltransferase. (606 aa)
	LOC101513173	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5. (233 aa)
	NAC39	NAC domain-containing protein 83. (227 aa)
	LOC101506647	Probable methyltransferase PMT24. (782 aa)
	NAC43	NAC domain-containing protein 2. (289 aa)
	LOC101497969	MACPF domain-containing protein At4g24290-like. (600 aa)
	LOC101509531	MACPF domain-containing protein At4g24290-like. (237 aa)
	LOC101506113	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like. (236 aa)
	LOC101503871	Stress-related protein-like. (154 aa)
	LOC101509969	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10. (165 aa)
	ARF18	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (706 aa)
	LOC101505469	MACPF domain-containing protein CAD1-like. (585 aa)
	LOC101510192	Transcription factor TCP17. (353 aa)
	LOC101509665	Methyltransferase. (611 aa)
	NAC60	NAC domain-containing protein 2. (298 aa)
	ARF21	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (612 aa)
	LOC101506914	Methyltransferase. (644 aa)
	LOC101501775	NAC domain-containing protein 41-like. (272 aa)
	LOC101510691	Methyltransferase. (649 aa)
	LOC101499373	Methyltransferase. (194 aa)
	LOC105851709	Mini zinc finger protein 2-like. (90 aa)
	LOC101515083	Methyltransferase. (649 aa)
	LOC105851862	Methyltransferase. (618 aa)
	LOC101514283	MACPF domain-containing protein NSL1. (618 aa)
	LOC105851094	Ethylene-responsive transcription factor-like protein At4g13040. (178 aa)
	LOC105851090	Cysteine proteinase inhibitor; Belongs to the cystatin family. Phytocystatin subfamily. (101 aa)
	LOC105852666	Hexosyltransferase; Belongs to the glycosyltransferase 8 family. (90 aa)
	LOC113786691	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (300 aa)
	LOC101510059	Protein SHI RELATED SEQUENCE 1-like. (205 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF18	LOC101491769	A0A1S2YK58	A0A1S2Y666	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.494
ARF18	LOC101497242	A0A1S2YK58	A0A1S2XGJ2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like.	0.417
ARF18	LOC101497300	A0A1S2YK58	A0A1S2Y5V5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	F-box protein At2g26850-like.	0.459
ARF18	LOC101497969	A0A1S2YK58	A0A1S2YF26	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	MACPF domain-containing protein At4g24290-like.	0.511
ARF18	LOC101498381	A0A1S2YK58	A0A1S2XWM6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like.	0.437
ARF18	LOC101499373	A0A1S2YK58	A0A1S2Z8S4	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.482
ARF18	LOC101501775	A0A1S2YK58	A0A1S2Z1L1	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	NAC domain-containing protein 41-like.	0.487
ARF18	LOC101502625	A0A1S2YK58	A0A1S2XSS0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	F-box protein At2g26850-like.	0.416
ARF18	LOC101502781	A0A1S2YK58	A0A1S2X9W6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like.	0.433
ARF18	LOC101503350	A0A1S2YK58	A0A1S2XKZ6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.448
ARF18	LOC101503871	A0A1S2YK58	A0A1S2YHX2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Stress-related protein-like.	0.416
ARF18	LOC101505469	A0A1S2YK58	A0A1S2YL47	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	MACPF domain-containing protein CAD1-like.	0.449
ARF18	LOC101506113	A0A1S2YK58	A0A1S2YH43	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like.	0.430
ARF18	LOC101506156	A0A1S2YK58	A0A1S2XMF2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	OBERON-like protein; Probable transcription factor.	0.531
ARF18	LOC101506306	A0A1S2YK58	A0A1S2Y1J2	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.490
ARF18	LOC101506647	A0A1S2YK58	A0A1S2YBW4	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Probable methyltransferase PMT24.	0.501
ARF18	LOC101506914	A0A1S2YK58	A0A1S2YW48	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.500
ARF18	LOC101509531	A0A1S2YK58	A0A1S2YG94	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	MACPF domain-containing protein At4g24290-like.	0.462
ARF18	LOC101509665	A0A1S2YK58	A0A1S2YS19	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Methyltransferase.	0.519
ARF18	LOC101510059	A0A1S2YK58	A0A3Q7YFE5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Protein SHI RELATED SEQUENCE 1-like.	0.493