11 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101501308	SNW/SKI-interacting protein A-like. (608 aa)
	LOC101500879	pre-mRNA-splicing factor SYF1. (914 aa)
	LOC101510340	pre-mRNA-splicing factor ISY1 homolog. (303 aa)
	LOC101492291	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	LOC101503280	Crooked neck-like protein 1. (696 aa)
	LOC101497402	pre-mRNA-splicing factor syf2. (311 aa)
	LOC101490489	RNA helicase aquarius. (1587 aa)
	LOC101515248	Zinc finger CCCH domain-containing protein 40-like. (484 aa)
	LOC101488818	WD repeat-containing protein 25. (420 aa)
	LOC101513599	LOW QUALITY PROTEIN: SNW/SKI-interacting protein A-like. (613 aa)
	LOC101507663	Crooked neck-like protein 1. (695 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101488818	LOC101490489	A0A1S2YU82	A0A1S2Y233	WD repeat-containing protein 25.	RNA helicase aquarius.	0.902
LOC101488818	LOC101492291	A0A1S2YU82	A0A1S2XVA2	WD repeat-containing protein 25.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.966
LOC101488818	LOC101497402	A0A1S2YU82	A0A1S2Y016	WD repeat-containing protein 25.	pre-mRNA-splicing factor syf2.	0.983
LOC101488818	LOC101500879	A0A1S2YU82	A0A1S2XC86	WD repeat-containing protein 25.	pre-mRNA-splicing factor SYF1.	0.950
LOC101488818	LOC101501308	A0A1S2YU82	A0A1S2XAT3	WD repeat-containing protein 25.	SNW/SKI-interacting protein A-like.	0.909
LOC101488818	LOC101503280	A0A1S2YU82	A0A1S2XVN9	WD repeat-containing protein 25.	Crooked neck-like protein 1.	0.916
LOC101488818	LOC101507663	A0A1S2YU82	A0A3Q7YH09	WD repeat-containing protein 25.	Crooked neck-like protein 1.	0.916
LOC101488818	LOC101510340	A0A1S2YU82	A0A1S2XPR8	WD repeat-containing protein 25.	pre-mRNA-splicing factor ISY1 homolog.	0.941
LOC101488818	LOC101513599	A0A1S2YU82	A0A3Q7XYD6	WD repeat-containing protein 25.	LOW QUALITY PROTEIN: SNW/SKI-interacting protein A-like.	0.909
LOC101488818	LOC101515248	A0A1S2YU82	A0A1S2YAL6	WD repeat-containing protein 25.	Zinc finger CCCH domain-containing protein 40-like.	0.944
LOC101490489	LOC101488818	A0A1S2Y233	A0A1S2YU82	RNA helicase aquarius.	WD repeat-containing protein 25.	0.902
LOC101490489	LOC101492291	A0A1S2Y233	A0A1S2XVA2	RNA helicase aquarius.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.973
LOC101490489	LOC101497402	A0A1S2Y233	A0A1S2Y016	RNA helicase aquarius.	pre-mRNA-splicing factor syf2.	0.919
LOC101490489	LOC101500879	A0A1S2Y233	A0A1S2XC86	RNA helicase aquarius.	pre-mRNA-splicing factor SYF1.	0.993
LOC101490489	LOC101501308	A0A1S2Y233	A0A1S2XAT3	RNA helicase aquarius.	SNW/SKI-interacting protein A-like.	0.961
LOC101490489	LOC101503280	A0A1S2Y233	A0A1S2XVN9	RNA helicase aquarius.	Crooked neck-like protein 1.	0.980
LOC101490489	LOC101507663	A0A1S2Y233	A0A3Q7YH09	RNA helicase aquarius.	Crooked neck-like protein 1.	0.980
LOC101490489	LOC101510340	A0A1S2Y233	A0A1S2XPR8	RNA helicase aquarius.	pre-mRNA-splicing factor ISY1 homolog.	0.982
LOC101490489	LOC101513599	A0A1S2Y233	A0A3Q7XYD6	RNA helicase aquarius.	LOW QUALITY PROTEIN: SNW/SKI-interacting protein A-like.	0.961
LOC101490489	LOC101515248	A0A1S2Y233	A0A1S2YAL6	RNA helicase aquarius.	Zinc finger CCCH domain-containing protein 40-like.	0.977