40 items (Cicer arietinum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101510150	Uncharacterized protein At3g06530. (1956 aa)
	LOC101500258	Protein KRI1 homolog. (683 aa)
	LOC101515036	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (331 aa)
	LOC101504958	Periodic tryptophan protein 2. (884 aa)
	LOC101488232	40S ribosomal protein S21-2. (113 aa)
	LOC101513742	Probable ribosomal protein S11, mitochondrial. (237 aa)
	LOC101514845	pre-rRNA-processing protein ESF2. (250 aa)
	LOC101489245	Ribosomal RNA processing protein 36 homolog. (251 aa)
	LOC101511184	U3 small nucleolar RNA-associated protein 25. (681 aa)
	LOC101510331	Uncharacterized protein LOC101510331. (163 aa)
	LOC101495083	Pumilio homolog 23. (744 aa)
	LOC101513034	rRNA-processing protein EFG1 isoform X1. (357 aa)
	LOC101506294	Probable U3 small nucleolar RNA-associated protein 7. (536 aa)
	LOC101511029	Uncharacterized protein LOC101511029. (380 aa)
	LOC101498850	DDB1- and CUL4-associated factor 13. (452 aa)
	LOC101497619	ATP-dependent RNA helicase DEAH13-like. (521 aa)
	LOC101488430	pre-rRNA-processing protein TSR1 homolog. (792 aa)
	LOC101512651	40S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family. (140 aa)
	LOC101511571	Something about silencing protein 10 isoform X1. (677 aa)
	LOC101490629	Uncharacterized protein LOC101490629. (163 aa)
	LOC101508478	40S ribosomal protein S16-like. (99 aa)
	LOC101494300	Neuroguidin-like. (317 aa)
	LOC101504099	Ribosome biogenesis protein BMS1 homolog isoform X1. (1197 aa)
	LOC101497116	U3 small nucleolar RNA-associated protein 6 homolog. (656 aa)
	LOC101495596	Transducin beta-like protein 3. (907 aa)
	LOC101514314	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (217 aa)
	LOC101488923	pre-rRNA-processing protein TSR2 homolog. (203 aa)
	LOC101512044	pre-rRNA-processing protein TSR2. (109 aa)
	LOC101505744	Neuroguidin-like. (317 aa)
	LOC101499963	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (112 aa)
	LOC101506175	Nucleolar protein 10. (694 aa)
	LOC101510801	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (79 aa)
	LOC101505996	ATP-dependent RNA helicase DEAH13. (799 aa)
	LOC101492545	Uncharacterized protein At3g06530-like. (1128 aa)
	LOC101490659	40S ribosomal protein S16-like isoform X1; Belongs to the universal ribosomal protein uS9 family. (192 aa)
	LOC101494015	U3 small nucleolar RNA-associated protein 25-like. (103 aa)
	LOC105852750	Neuroguidin-like. (127 aa)
	LOC101506503	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	LOC101508980	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (221 aa)
	LOC101508784	40S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family. (143 aa)

Your Current Organism:

Cicer arietinum

NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101488232	LOC101488430	A0A1S2XGW8	A0A1S2Y999	40S ribosomal protein S21-2.	pre-rRNA-processing protein TSR1 homolog.	0.934
LOC101488232	LOC101490659	A0A1S2XGW8	A0A1S3DXZ9	40S ribosomal protein S21-2.	40S ribosomal protein S16-like isoform X1; Belongs to the universal ribosomal protein uS9 family.	0.913
LOC101488232	LOC101499963	A0A1S2XGW8	A0A1S2Z2D5	40S ribosomal protein S21-2.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.924
LOC101488232	LOC101506503	A0A1S2XGW8	A0A1S4ETJ6	40S ribosomal protein S21-2.	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family.	0.906
LOC101488232	LOC101508478	A0A1S2XGW8	A0A1S2YIW7	40S ribosomal protein S21-2.	40S ribosomal protein S16-like.	0.913
LOC101488232	LOC101508784	A0A1S2XGW8	A0A3Q7YG38	40S ribosomal protein S21-2.	40S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family.	0.913
LOC101488232	LOC101508980	A0A1S2XGW8	A0A3Q7Y7L3	40S ribosomal protein S21-2.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.924
LOC101488232	LOC101510801	A0A1S2XGW8	A0A1S2Z8Y5	40S ribosomal protein S21-2.	40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.913
LOC101488232	LOC101512651	A0A1S2XGW8	A0A1S2YDR2	40S ribosomal protein S21-2.	40S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family.	0.913
LOC101488232	LOC101514314	A0A1S2XGW8	A0A1S2YUQ9	40S ribosomal protein S21-2.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.924
LOC101488430	LOC101488232	A0A1S2Y999	A0A1S2XGW8	pre-rRNA-processing protein TSR1 homolog.	40S ribosomal protein S21-2.	0.934
LOC101488430	LOC101488923	A0A1S2Y999	A0A1S2YWI1	pre-rRNA-processing protein TSR1 homolog.	pre-rRNA-processing protein TSR2 homolog.	0.753
LOC101488430	LOC101490659	A0A1S2Y999	A0A1S3DXZ9	pre-rRNA-processing protein TSR1 homolog.	40S ribosomal protein S16-like isoform X1; Belongs to the universal ribosomal protein uS9 family.	0.689
LOC101488430	LOC101492545	A0A1S2Y999	A0A1S2Z975	pre-rRNA-processing protein TSR1 homolog.	Uncharacterized protein At3g06530-like.	0.900
LOC101488430	LOC101494015	A0A1S2Y999	A0A1S3DY62	pre-rRNA-processing protein TSR1 homolog.	U3 small nucleolar RNA-associated protein 25-like.	0.890
LOC101488430	LOC101494300	A0A1S2Y999	A0A1S2YKK5	pre-rRNA-processing protein TSR1 homolog.	Neuroguidin-like.	0.576
LOC101488430	LOC101495083	A0A1S2Y999	A0A1S2XQ04	pre-rRNA-processing protein TSR1 homolog.	Pumilio homolog 23.	0.872
LOC101488430	LOC101495596	A0A1S2Y999	A0A1S2YRR5	pre-rRNA-processing protein TSR1 homolog.	Transducin beta-like protein 3.	0.902
LOC101488430	LOC101497116	A0A1S2Y999	A0A1S2YP24	pre-rRNA-processing protein TSR1 homolog.	U3 small nucleolar RNA-associated protein 6 homolog.	0.928
LOC101488430	LOC101497619	A0A1S2Y999	A0A1S2Y923	pre-rRNA-processing protein TSR1 homolog.	ATP-dependent RNA helicase DEAH13-like.	0.682